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Medical Accounting Software

Last updated: April 2026

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47 software options

Sage Intacct logo

Sage Intacct

Best-in-class Cloud ERP for Finance

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HIPAA-compliant healthcare accounting with departmental costing, revenue cycle, multi-location consolidation, EHR integrations, audit trail.

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Accounting Seed logo

Accounting Seed

Accounting and analytics software built on Salesforce

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Accounting Seed is an accounting application built natively on Salesforce. Its customizable, enabling users to manage their accounting their way. As a full accounting solution, Accounting Seed tracks financial data through the entire business lifecycle.

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FloQast logo

AI-enabled accounting automation solution

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FloQast is an accounting automation solution that helps accountants close their books faster, more accurately and collaboratively. It gives an automated, integrated view of financial data to help reduce errors and save time

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ALTO Accounts Payable logo

Procurement and accounts payable automation solution

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ALTO Accounts Payable solution by Innovation Centric Group is a comprehensive procurement and accounts payable automation solution. It features robotic and AI-enabled workflows to streamline processes like invoice submission, approvals, sourcing, and payments.

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SapphireOne logo

Enterprise Resource Planning software

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SapphireOne streamlines medical accounting with tailored features for healthcare, ensuring accurate billing, invoicing, and compliance. Real-time data integration enhances efficiency in managing patient accounts and claims. Customisable reports offer insights, while scalability supports growth.

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ActivityHD logo

ERP software for accounting and business management

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ActivityHD is a flexible and comprehensive ERP system that offers customizable tools and management for various complex processes. The software assists businesses of all sizes with payroll processing, accounting, business management and more.

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NextProcess logo

Accounts Payable software for automated invoice processing

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NextProcess accounts payable (AP) software integrates with existing ERPs to accurately automate invoice processing, route approvals and add vendor self-services

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TopNotepad logo

All-in-one software for managing small businesses

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TopNotepad is a cloud-based business management solution for freelancers and small businesses, offering invoicing, accounting and indirect tax (Sales Tax/VAT/GST) compliance solution.

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Prophix One logo

Automate & streamline corporate performance management

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Prophix allows organizations to automate & integrate their budgeting, planning, forecasting, financial consolidation, & reporting activities on one platform

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CashManager by Accomplish logo

Online & desktop accounting software

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CashManager is an online & desktop accounting software which offers tools for customer & supplier invoicing, bank reconciliation, quoting, reporting, and more

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Xledger logo

Empower ambition with Xledger.

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Xledger is a true cloud finance management platform, founded in 2000, and trusted by 100,000+ users worldwide. It automates accounting, unifies multi-entity reporting, and delivers real time insights, helping organisations modernise finance and outperform traditional ERPs

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SBS Financials logo

Accounting software for the financial businesses

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SBS Financials is an accounting software designed to help businesses plan and manage budgets, approval workflows, billing, invoicing, and bank reconciliations. The platform enables managers to access financial information and track progress against key performance indicators (KPIs).

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QuickBooks Enterprise logo

Enterprise accounting, FSM and inventory management solution

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QuickBooks Desktop Enterprise is an accounting software for small businesses which provides users with real-time access to customer, employee, and vendor information. The software includes tools for managing inventory, shipping, sales orders, pricing, tasks, invoicing, reporting, and more.

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Daxko Operations logo

Membership management software for non-profit organizations

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Complete operations software for member-based nonprofits - integrating programs, billing, and check-ins in one secure system.

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R4 Enterprise logo

Enterprise resource planning (ERP) solution

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R4 Enterprise is an enterprise resource planning (ERP) solution that helps businesses streamline operations related to inventory management, manufacturing execution, financial planning, and more on a centralized platform. It enables staff members to utilize the built-in CRM tool to track sales processes and access customer information to optimize overall businesses operations.

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Rerun logo

Recurring billing. Simplified.

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Rerun is for any small business, organization or association that wants to automate their recurring, subscription or membership billing.

Rerun integrates with AccountEdge, QuickBooks and Xero to help your business run efficiently.

Get started for FREE.
Pay only for what you process.
2.9% + $0.30 per transaction.

Free 30-day trial.
No credit card required.

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QuickBooks Online Advanced logo

Accounting & business management for small businesses

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QuickBooks Online Advanced is a web-based accounting & business management solution which enables small businesses to track sales, inventory, financial accounts & payroll from a single dashboard

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SAP Business ByDesign logo

Cloud ERP solution for small and medium sized businesses

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SAP Business ByDesign is an integrated business management solution delivered on a subscription basis through the cloud. SAP Business ByDesign can be localized for 130 different countries and for several specific industries, including manufacturing, wholesale distribution, PSA, non-profit, and more.

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Zoho Books logo

Online accounting software for businesses of all sizes

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Zoho Books is an online accounting software designed to streamline back office operations, automate workflows, and allow secure collaboration with accountants

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Wave logo

Accounting, invoicing, and payroll management platform

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Wave is an integrated solution designed for small businesses. With our automatic bank connections, information flows into Wave, without manual entry. Users can collaborate with accountants or bookkeepers in real-time.

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Dynamics 365 logo

ERP and CRM applications from Microsoft

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Microsoft Dynamics 365 is a multi-language, multi-currency enterprise resource planning (ERP) software. The solution is designed for midsize and larger companies, and is fully customizable and extensible through its rich development platform and tools.

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Multiview ERP logo

Enterprise resource planning (ERP) solution

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Multiview is a highly-scalable modular ERP software for scaling organizations which require more automation, control and insight into their operations. A fully-integrated suite of financials ranges from core accounting, budgeting and forecasting to materials management and workflow approvals.

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SAP S/4HANA Cloud logo

A complete, intelligent ERP system for enterprises.

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SAP S/4HANA Cloud is a cloud-based intelligent ERP system specifically developed for companies in all industries offering them a broad and flexible functionality.

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QuickBooks Online logo

Accounting and business management software

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QuickBooks Online is an all-in-one online business software designed to help manage business finances. The platform is built to scale businesses, unlocking insights and providing the functionality of a larger team, all on one integrated platform.

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AccuFund Accounting Suite logo

Online and Onsite Accounting Software for Nonprofits & Govt

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AccuFund’s complete nonprofit financial management system improves all critical aspects of your nonprofit, from budget development to grants management to payroll and HR and accounts payable, selecting the modules that your nonprofit needs now and add others in the future as needs evolve.

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