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Medical Accounting Software

Last updated: April 2026

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41 software options

Sage Intacct logo

Sage Intacct

Best-in-class Cloud ERP for Finance

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HIPAA-compliant healthcare accounting with departmental costing, revenue cycle, multi-location consolidation, EHR integrations, audit trail.

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AcuSheet logo

Simple Accounting Software

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AcuSheet is easy to use accounting and invoicing software to track and manage your finances so you can focus more on your business.

AcuSheet helps businesses manage accounts in the background to ensure compliance and also generates financial reports.

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Contabilizei logo

Líder em abertura de empresas e gestão de CNPJS

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Há mais de 10 anos no mercado, a Contabilizei une tecnologia e expertise de um time de mais de 1.200 especialistas e 80 contadores que atendem os clientes por chat, mensagens e telefone de forma prática e rápida.

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InvoiceBerry logo

Online invoicing & expense tracking for SMBs and freelancers

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InvoiceBerry offers online invoicing & expense tracking for small businesses, freelancers and sole traders

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SapphireOne logo

Enterprise Resource Planning software

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SapphireOne streamlines medical accounting with tailored features for healthcare, ensuring accurate billing, invoicing, and compliance. Real-time data integration enhances efficiency in managing patient accounts and claims. Customisable reports offer insights, while scalability supports growth.

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Indy logo

All in one application for freelancers !

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Online application that helps self-employed automate accounting, from expense tracking to tax filling and bank reconciliation.

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TopNotepad logo

All-in-one software for managing small businesses

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TopNotepad is a cloud-based business management solution for freelancers and small businesses, offering invoicing, accounting and indirect tax (Sales Tax/VAT/GST) compliance solution.

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Clear Books logo

Online accounting software for small businesses

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Clear Books Accounting Software is an online accounting system for small businesses. Clear Books has been developed with the aim of guiding the user through day to day accounting and bookkeeping tasks and providing access to client accounts anytime and from anywhere with an Internet connection.

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FINSYNC logo

Powerful Partnerships Simplified Finances Stronger Business

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FINSYNC helps entrepreneurs and small business owners simplify operations and secure affordable funding through one connected platform.

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CashManager by Accomplish logo

Online & desktop accounting software

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CashManager is an online & desktop accounting software which offers tools for customer & supplier invoicing, bank reconciliation, quoting, reporting, and more

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Momenteo logo

Tailored for freelancers

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Momenteo is a user-friendly invoicing software that allows users to create, send, and track invoices and estimates.

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ZipBooks logo

Accounting and online invoicing software

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ZipBooks is a cloud-based accounting software that caters to the bookkeeping and accounting needs of small to medium-sized businesses and bookkeeping firms. The solution offers core accounting, financial reporting, online invoicing, expense tracking, credit card processing, and more.

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QuickBooks Enterprise logo

Enterprise accounting, FSM and inventory management solution

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QuickBooks Desktop Enterprise is an accounting software for small businesses which provides users with real-time access to customer, employee, and vendor information. The software includes tools for managing inventory, shipping, sales orders, pricing, tasks, invoicing, reporting, and more.

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Daxko Operations logo

Membership management software for non-profit organizations

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Complete operations software for member-based nonprofits - integrating programs, billing, and check-ins in one secure system.

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Rerun logo

Recurring billing. Simplified.

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Rerun is for any small business, organization or association that wants to automate their recurring, subscription or membership billing.

Rerun integrates with AccountEdge, QuickBooks and Xero to help your business run efficiently.

Get started for FREE.
Pay only for what you process.
2.9% + $0.30 per transaction.

Free 30-day trial.
No credit card required.

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QuickBooks Online Advanced logo

Accounting & business management for small businesses

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QuickBooks Online Advanced is a web-based accounting & business management solution which enables small businesses to track sales, inventory, financial accounts & payroll from a single dashboard

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Zoho Books logo

Online accounting software for businesses of all sizes

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Zoho Books is an online accounting software designed to streamline back office operations, automate workflows, and allow secure collaboration with accountants

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Wave logo

Accounting, invoicing, and payroll management platform

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Wave is an integrated solution designed for small businesses. With our automatic bank connections, information flows into Wave, without manual entry. Users can collaborate with accountants or bookkeepers in real-time.

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Dynamics 365 logo

ERP and CRM applications from Microsoft

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Microsoft Dynamics 365 is a multi-language, multi-currency enterprise resource planning (ERP) software. The solution is designed for midsize and larger companies, and is fully customizable and extensible through its rich development platform and tools.

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SAP S/4HANA Cloud logo

A complete, intelligent ERP system for enterprises.

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SAP S/4HANA Cloud is a cloud-based intelligent ERP system specifically developed for companies in all industries offering them a broad and flexible functionality.

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QuickBooks Online logo

Accounting and business management software

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QuickBooks Online is an all-in-one online business software designed to help manage business finances. The platform is built to scale businesses, unlocking insights and providing the functionality of a larger team, all on one integrated platform.

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AccuFund Accounting Suite logo

Online and Onsite Accounting Software for Nonprofits & Govt

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AccuFund’s complete nonprofit financial management system improves all critical aspects of your nonprofit, from budget development to grants management to payroll and HR and accounts payable, selecting the modules that your nonprofit needs now and add others in the future as needs evolve.

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SAP Concur logo

Travel, expense and invoice, automated and in control

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SAP Concur is a leading cloud-based spend management solution that helps small, medium, and large businesses automate and simplify expense reporting, travel booking, and invoice processing. It’s designed to give organizations better control over their business spend by integrating near real-time data and using AI to audit 100% of transactions.

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Billed logo

Invoicing & accounting software for small businesses

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Billed is an invoicing and accounting software designed for small businesses to get paid faster. It offers features such as online invoicing, expense tracking, time tracking, recurring invoices, and credit card payments to streamline financial management. Billed also provides project management tools, financial reporting, and the ability to manage multiple businesses from a single platform, empowering small business owners to focus on growth.

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CustomBooks logo

Accounting solution for SMBs

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CustomBooks™ is a cloud-based accounting solution, which helps small to midsize businesses manage purchase, sales orders and inventory across multiple channels. Key features include shipment tracking, quote creation, data import, costing, item tagging, billing, and reporting.

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