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Medical Accounting Software

Last updated: April 2026

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16 software options

Sage Intacct logo

Sage Intacct

Best-in-class Cloud ERP for Finance

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HIPAA-compliant healthcare accounting with departmental costing, revenue cycle, multi-location consolidation, EHR integrations, audit trail.

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SapphireOne logo

Enterprise Resource Planning software

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SapphireOne streamlines medical accounting with tailored features for healthcare, ensuring accurate billing, invoicing, and compliance. Real-time data integration enhances efficiency in managing patient accounts and claims. Customisable reports offer insights, while scalability supports growth.

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Versa Cloud ERP logo

Best ERP for Inventory Heavy Businesses

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Versa is Modern all-in-one Cloud ERP created for fast growing inventory heavy manufacturing, distribution, and e-commerce businesses. The solution is easy to afford, quick to implement, easy to learn and use.

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TopNotepad logo

All-in-one software for managing small businesses

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TopNotepad is a cloud-based business management solution for freelancers and small businesses, offering invoicing, accounting and indirect tax (Sales Tax/VAT/GST) compliance solution.

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Clear Books logo

Online accounting software for small businesses

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Clear Books Accounting Software is an online accounting system for small businesses. Clear Books has been developed with the aim of guiding the user through day to day accounting and bookkeeping tasks and providing access to client accounts anytime and from anywhere with an Internet connection.

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FINSYNC logo

Powerful Partnerships Simplified Finances Stronger Business

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FINSYNC helps entrepreneurs and small business owners simplify operations and secure affordable funding through one connected platform.

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ZipBooks logo

Accounting and online invoicing software

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ZipBooks is a cloud-based accounting software that caters to the bookkeeping and accounting needs of small to medium-sized businesses and bookkeeping firms. The solution offers core accounting, financial reporting, online invoicing, expense tracking, credit card processing, and more.

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QuickBooks Online Advanced logo

Accounting & business management for small businesses

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QuickBooks Online Advanced is a web-based accounting & business management solution which enables small businesses to track sales, inventory, financial accounts & payroll from a single dashboard

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Zoho Books logo

Online accounting software for businesses of all sizes

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Zoho Books is an online accounting software designed to streamline back office operations, automate workflows, and allow secure collaboration with accountants

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Wave logo

Accounting, invoicing, and payroll management platform

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Wave is an integrated solution designed for small businesses. With our automatic bank connections, information flows into Wave, without manual entry. Users can collaborate with accountants or bookkeepers in real-time.

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QuickBooks Online logo

Accounting and business management software

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QuickBooks Online is an all-in-one online business software designed to help manage business finances. The platform is built to scale businesses, unlocking insights and providing the functionality of a larger team, all on one integrated platform.

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CustomBooks logo

Accounting solution for SMBs

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CustomBooks™ is a cloud-based accounting solution, which helps small to midsize businesses manage purchase, sales orders and inventory across multiple channels. Key features include shipment tracking, quote creation, data import, costing, item tagging, billing, and reporting.

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InvoiceSherpa logo

Invoice payment reminder app

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InvoiceSherpa is an invoice management and debt recovery application that helps to track and follow up with overdue payments. It integrates with major accounting apps, automatically extracting invoice and customer data from the core accounting software, and updating the data when payments are made.

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Sage 300 logo

Cloud-based business management software

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Sage 300cloud is a cloud-based business management solution design to help small to medium-sized companies manage their business without requiring traditional ERP software. The system supports multiple companies, currencies, and languages to simplify results reporting, bank reconciliation, and more.

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Saasu logo

Small business online accounting

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Saasu is an online accounting app for Australian small businesses. Featuring online invoicing, recurring card charges, bankfeeds, single touch payroll, cashflow forecasts, budgets and advanced inventory from $15 per month for 1,000 trans p.a.

Software developers are provided with a flexible API,

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CloudBooks logo

Send Invoices, Estimates, log Expenses, track Time

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CloudBooks enables small businesses and freelancers to send professional invoices, automate payment reminders, manage projects, track time, log expenses, accept payments online and much more,

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