Paycom vs QuickBooks Online

FreshBooks

Paycor

QuickBooks Desktop

Paychex Flex

Paylocity

Wave

Compare Paycom and QuickBooks Online based on features, pricing, verified reviews, integrations & more on GetApp. Find out which software is best for your business in 2026.

One unified platform for HR, Finance, and IT. Connect people, processes, and data. Automate tasks and drive business growth. 

Paychex Flex® simplifies payroll and HR with cloud-based technology, automated taxes, and powerful tools like recruiting, employee engagement, perks, and analytics. Access it from anywhere and empower your team, save time, and get 24/7 support for your growing business.

Paycor’s all-in-one, cloud-based human capital management (HCM) platform modernizes every aspect of people management, from recruiting, onboarding and payroll to career development and retention.

With its industry-first AI engine, IWant™, Paycom provides instant and accurate access to employee data without having to navigate or learn the software.

1099 Preparation

360 Degree Feedback

401(k) Tracking

ACA Reporting

Access Controls/Permissions

Accounting Integration

Activity Dashboard

Activity Tracking

Ad hoc Query

Ad hoc Reporting

AI Copilot

Alerts/Escalation

Alerts/Notifications

Analytics

Applicant Tracking

Application Management

Approval Process Control

Approval Workflow

Archiving & Retention

Assessment Management

Asynchronous Learning

Attendance Management

Attendance Tracking

Audit Management

Audit Trail

Auto Update

Automated Receipt Matching

Automated Scheduling

Availability Management

Background Screening

Batch Processing

Benchmarking

Benefits Administration Outsourcing

Benefits Dashboard

Benefits Management

Billable & Non-Billable Hours

Billing & Invoicing

Biometric Recognition

Blended Learning

Bonus Management

Break Management

Budget Management

Budgeting/Forecasting

Built-in Course Authoring

Business Process Automation

Calendar Management

Candidate Management

Candidate Profiles

Career Development

Cash Flow Management

Categorization/Grouping

Certification & Licensing

Certification Tracking

Check Printing

Class Scheduling

Clock In/Out

COBRA Administration

Collaboration Tools

Communication Management

Compensation Management

Compensation Plan Modeling

Compensation Statements

Competency Management

Compliance Management

Compliance Tracking

Configurable Workflow

Content Library

Content Management

Corporate Card

Corporate/Business

Corrective and Preventive Actions (CAPA)

Course Management

Course Tracking

Credit Card Management

Criminal History Verification

Customizable Branding

Customizable Fields

Customizable Forms

Customizable Reports

Customizable Templates

Dashboard

Data Connectors

Data Import/Export

Data Security

Data Synchronization

Data Verification

Data Visualization

Deduction Management

Digital Signature

Direct Deposit

Disability Insurance Administration

Discussions/Forums

Document Management

Document Storage

Drag & Drop

Drug & Health Screenings

Duplicate Detection

Education Verification

eLearning Companies

Paycom

Android

Web-based

Windows

iPad

iPhone

Accounting & Payroll Administrator

I love that it allows employees the ability to access and change their profiles and be responsible for their timecards.

Procurement Analyst/Buyer

I love how user friendly this product is for everyone. Everything is very self explanatory and if you have any questions, customer service is very helpful and patient.

VP of HR

We have been very frustrated with our implementation and ongoing service. They push to go live in a very short amount of time but did a terrible job of working to make sure the set up was right.

Senior Account Executive

Overall our rapidly growing business was due for a professional, easy, and affordable tool  to manager payroll, benefits, HR related things, etc. and this was perfect.

Corporate Receptionist

Paycom is very easy to use. Not only is it a great site for clocking in / out it has many features such as document storage, Time Off, Benefits information, and so on.

Program Manager

I like the benefit feature, very clear to see what my choices are, update my benefits package.

Payroll Manager

I like the quality of the payroll functions better than ADP and Paychex hands down.

Overall, I am very pleased with the functionality, ease of use and customer service.

Human Resources Manager

Her work ethic was always professional and positive. Trainings were easy because she always took time to explain why each step was important as opposed to just click here and move on.

Language Operations Manager 

It is very user friendly and easy to navigate. Very intuitive and easy to do bulk approvals specially when you manage 150+ employees.

Agent Marketing Lead

I have had several daily timecards messed up because of this.

Account Executive

Overall, the experience was great. It was easy to use and the platform was simple.

Director of Human Resources

The UI and ease of use is at the top of the market.

Editor/Publisher

Tremendous Human Resources tool at a fair price. Keep track of everything from talent acquisition, time and labor management, and payroll, all in one application.

Office Administration

When researching Paycom the only negative review I seemed to come across was difficulty with the software.

I don't know if it is a glitch, or user error, but when I try to add an in/out punch for a lunch break if an employee forgets to clock out, it sets it as an in/out punch for the day.

retail

I love that I can get easy access to my paycom accnt to add money right on the spot without a delay.

Associate Director

It was a way to integrate our HR experience and it's done that job effectively.

Paycom screenshot: Paycom schedule

Paycom screenshot: Paycom chat

Paycom screenshot: Paycom calendar

Paycom screenshot: Paycom time-off request

Paycom screenshot: Paycom pay

Freelancers

Large Enterprises

Mid Size Business

Non Profit

Public Administrations

Small Business

FreshBooks is accounting software that helps small business perform accounting tasks, conduct invoicing, manage expenses, and more.

Wave is an integrated solution designed for small businesses. With our automatic bank connections, information flows into Wave, without manual entry. Users can collaborate with accountants or bookkeepers in real-time.

QuickBooks Desktop provides a comprehensive business management solution that integrates accounting, payroll, inventory, and multiple company management functionalities. The software offers industry-specific editions tailored for manufacturing, wholesale, contractors, and accountants, with features like advanced reporting, job costing, and automated pricing rules. Users can enhance their experience with cloud hosting capabilities that enable remote access and team collaboration.

QuickBooks Online is an all-in-one online business software designed to help manage business finances. The platform is built to scale businesses, unlocking insights and providing the functionality of a larger team, all on one integrated platform.

Paycom vs QuickBooks Online Comparison (2026)

Paycom

QuickBooks Online

Overview

Video & Screenshots

Pricing

User reviews

Key features

Integrations

Alternatives