Zoho Billing vs QuickBooks Enterprise

FreshBooks

Stripe

Wave

Sage 50 Accounting

Chargebee

MoonClerk

Compare Zoho Billing and QuickBooks Enterprise based on features, pricing, verified reviews, integrations & more on GetApp. Find out which software is best for your business in 2026.

Stripe is a comprehensive financial infrastructure platform that enables businesses to accept payments online and in person. It offers a suite of APIs for payment processing, subscription management, fraud prevention, and financial services integration, supporting over one hundred payment methods across multiple currencies. Stripe provides both developer-focused tools with extensive documentation and no-code solutions for businesses without technical staff.

MoonClerk is a cloud-based billing and online payment solution which enables users to create online payment forms for and receive one-off and recurring payments

Chargebee is a subscription management and billing platform that automates revenue operations and streamlines the subscription lifecycle. The platform offers no-code capabilities for product and pricing plan implementation. It includes self-service tools to manage churn and simplify payment recovery.

Zoho Billing is an end-to-end billing solution that helps businesses streamline their billing operations, manage customer lifecycle, and accelerate growth.

Accounting

Accounting Integration

ACH Payment Processing

Activity Dashboard

Activity Tracking

Alerts/Notifications

Approval Workflow

Billable & Non-Billable Hours

Billing & Invoicing

Billing Portal

Cancellation Management

Client Portal

Contact Database

Credit Card Processing

Credit Note

Customer Database

Customizable Branding

Customizable Fields

Customizable Invoices

Customizable Reports

Customizable Templates

Data Import/Export

Data Security

Data Visualization

Debit/Credit Card Processing

Deferred Billing

Discount Management

Dunning Management

Electronic Payments

Electronic Signature

Email Management

Enrollments/Onboarding

Expense Tracking

Financial Management

For Small Businesses

Hourly Billing

In-Person Payments

Invoice Creation

Invoice History

Invoice Management

Invoice Processing

Mileage Tracking

Mobile Access

Mobile App

Mobile Payments

Multi-Currency

Multi-Language

Multi-Period Recurring Billing

Multiple Payment Options

Online Invoicing

Online Payments

Partial Payments

Payment Gateway Integration

Payment Processing

PCI Compliance

Product Catalog

Project Billing

Project Time Tracking

Project Tracking

Quotes/Estimates

Real-Time Analytics

Real-Time Data

Real-Time Notifications

Real-Time Reporting

Receipt Management

Recurring Invoicing

Recurring/Subscription Billing

Refund Management

Reminders

Reporting & Statistics

Reporting/Analytics

Sales Tax Management

Search/Filter

Self Service Portal

Status Tracking

Subscription Management

Subscription Plan Management

Summary Reports

Tax Calculation

Tax Compliance

Tax Management

Third-Party Integrations

Time & Expense Tracking

Time Tracking

Timer

Timesheet Management

Transaction History

Transaction Monitoring

Usage Tracking/Analytics

Workflow Management

Zoho Billing

Android

Web-based

Windows

iPad

iPhone

Media and Content Developer

Loved the tool for building subscription checkout options, as well as the templates and options to customize with code. There was a great deal of freedom presented, and it served us very well.

Owner

They charged me for two consecutive years after I had cancelled and I had to despite it with my CCrd company.

I love how Zoho Subscriptions can connect to several payment processors. Its also wonderful how it auto syncs with Zoho CRM without having to build an API.

Director

Easy navigation, support documents, and support team is very helpful. As usual a product from Zoho family is awesome.

Support team is responsive, and goes the extra mile to help you. Pricing model is great for the startup and beyond.

Because our service model is subscription based, Zoho's tool that interacts with its CRM and other tools (like creator) is invaluable, and we are very pleased with it, and plan to use it indefinitely.

Overall i am happy with the secure environment which Zoho subscription has provided, we have tried to make this application but then decided to go with Zoho.

President

We are using Zoho for managing subscription payments for a SaaS product and it is working great. FOr the most part the system just works which is the most important thing to us.

administrator

Very useful, easy to integrate and over all very satisfied.

We needed to have one recurring invoice for partners that have multiple clients and subscriptions. And ZohoSubs was a great solution.

This has saved us hours of manual labor. I love how we can keep track of our clients and quickly issue refunds if needed.

Hosting pages features,  multiple products, and multiple plans, ease of use, clean interface. Subscription management is also very easy.

graphic designer

Good clean and simple to use and draw up and send invoices.

Payroll Specialist

My overall experience with Zoho billing was interesting, the interface was also user friendly for new hires to navigate.

This is truly odd to me, and many people in the forums are also confused why there has not been any ability to create different payment pages for different products.

Owner 

I see no reason to ever stop using this software.

Creative Director

The non-API deployment is a bit limited in terms of collecting any customer information that's not part of the default data.

When we first switched over Zoho subscriptions were the only tool that could email multiple reminders to the clients prior to the billing renewal which I feel is great for subscription services.

Zoho Billing screenshot: Zoho Billing dashboard


Zoho Billing screenshot: Zoho Billing projects


Zoho Billing screenshot: Zoho Billing subscriptions

Zoho Billing screenshot: Zoho Billing items


Zoho Billing screenshot: Zoho Billing dunning management

Zoho Billing screenshot: Zoho Billing performance overview

Freelancers

Large Enterprises

Mid Size Business

Non Profit

Public Administrations

Small Business

FreshBooks is accounting software that helps small business perform accounting tasks, conduct invoicing, manage expenses, and more.

Wave is an integrated solution designed for small businesses. With our automatic bank connections, information flows into Wave, without manual entry. Users can collaborate with accountants or bookkeepers in real-time.

Sage 50 Accounting is an online accounting solution for SMBs with Office 365 integration that helps manage accounting, invoicing, cash flow, inventory, taxes, and more.

QuickBooks Desktop Enterprise is an accounting software for small businesses which provides users with real-time access to customer, employee, and vendor information. The software includes tools for managing inventory, shipping, sales orders, pricing, tasks, invoicing, reporting, and more.

Zoho Billing vs QuickBooks Enterprise Comparison (2026)

Zoho Billing

QuickBooks Enterprise

Overview

Video & Screenshots

Pricing

User reviews

Key features

Integrations

Alternatives