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QuickBooks Desktop Payroll vs OnPay Comparison (2026)

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QuickBooks Desktop Payroll logo

QuickBooks Desktop Payroll

OnPay logo

OnPay

Overview

QuickBooks Payroll is a cloud-based payroll solution for small businesses which offers automatic payroll tax calculations, integrated time tracking, same day direct deposit, real-time data updates, tax form preparation and filing, and an online employee portal to streamline the payroll process

OnPay is an easy-to-use, cloud-based software for small and mid-sized businesses to simplify payroll, automate taxes, and manage HR backed by reliable, expert support.

  • Platforms supported
  • Web-based
  • iPhone app
  • Android app
  • Windows Phone app
  • Typical customers
  • Freelancers
  • Small businesses
  • Mid size businesses
  • Large enterprises
  • Customer support
  • Phone
  • Online
  • Knowledge base
  • Video tutorials
  • Platforms supported
  • Web-based
  • iPhone app
  • Android app
  • Windows Phone app
  • Typical customers
  • Freelancers
  • Small businesses
  • Mid size businesses
  • Large enterprises
  • Customer support
  • Phone
  • Online
  • Knowledge base
  • Video tutorials

Video & Screenshots

Pricing

Starting from

3.5

Per month

  • Free trial available
  • Credit cardless trial
  • Free account
  • Subscription based

Starting from

49

/user

Per month

  • Free trial available
  • Credit cardless trial
  • Free account
  • Subscription based

User reviews

4.5

999

5

4

3

2

1

680

199

61

18

41

  • Value for money
  • Ease of use
  • Features
  • Customer support
75%
would recommend this app

4.8

471

5

4

3

2

1

421

34

4

1

11

  • Value for money
  • Ease of use
  • Features
  • Customer support
95%
would recommend this app

Pros

“I especially appreciated the simplicity and convenience of running payroll—once set up, it usually takes just a few minutes, taxes are handled automatically with the right subscription, and everything syncs smoothly with QuickBooks accounting.”
AS

Angie S.

Partner

“We love that it deals with coming up with pay cheque amounts, removing all the taxes that need to be taken off and puts together what we owe to the government for payrolls taxes.”
Verified reviewer profile picture

Tanya D.

President

“Automation saves time and reduces the amount of manual work involved in calculating payroll and taxes. While the pricing and occasional setup or support issues can be drawbacks, overall it is a solid and user-friendly payroll solution.”
KL

Khimson L.

IT admin

Pros

“The platform provides a safe environment for managing payroll records, tax documents, direct deposit information, and personnel files while maintaining appropriate levels of user access and privacy.”
BB

Brenda B.

Executive Director

“Employees can easily track hours worked, monitor attendance, request paid time off, and review leave balances.”
BB

Brenda B.

Executive Director

“he service automatically handles all federal, state, and local tax calculations and filings with an accuracy guarantee, which provides peace of mind for business owners and saves significant time.”
CR

Cory R.

outside sales

Cons

“Hard to navigate the screens, Intuit has taken complete control over payroll, can't make adjustments when needed, Inuit sets up unneeded payroll items automatically, support is terrible and takes too long for corrections, support does not understand the payroll tax rules”
LM

Linda M.

Senior Manager

“However, occasional issues with payroll tax calculations and customer support have prevented me from giving it a perfect score, resulting in a solid 4-star rating.”
CC

Clara C.

Finance Manager

“The pricing structure can get expensive quickly, as monthly base fees combined with per-employee costs add up for mid-sized teams.”
Verified reviewer profile picture

Jennifer N.

Asst Payroll Clerk

Cons

“The only thing I didn’t like is that if there was anything wrong with payroll in any particular week, they completely lock you out of the account until it’s fixed.”
AC

Aaron C.

Owner

“First years super good, but the situation with the reemployment tax that had to be made by them, and they didnt care or help us with that, so that made us change the payroll company, so bad experience overall”
MO

Marcela O.

Owner

“Everyone is nice but this has been a frustrating process. If you have never done payroll before I would use a different company, this has been a lot.”
KM

Kallie M.

Office Manager

  • Vendor responds to reviews
  • Last review12 days ago
  • Vendor responds to reviews
  • Last review10 days ago

Key features

  • Total features51
  • 1099 Preparation
  • 360 Degree Feedback
  • 401(k) Tracking
  • Access Controls/Permissions
  • Accounting
  • Accounting Integration
  • Activity Dashboard
  • Activity Tracking
  • Alerts/Notifications
  • Applicant Tracking
  • Approval Process Control
  • Archiving & Retention
  • Attendance Tracking
  • Audit Management
  • Audit Trail
  • Benefits Dashboard
  • Benefits Management
  • Billable & Non-Billable Hours
  • Budgeting/Forecasting
  • Certification Tracking
  • Chatbot
  • Check Printing
  • Collaboration Tools
  • Compensation Management
  • Compliance Management
  • Compliance Tracking
  • Configurable Workflow
  • Customizable Reports
  • Customizable Templates
  • Dashboard
  • Data Import/Export
  • Data Visualization
  • Deduction Management
  • Digital Signature
  • Direct Deposit
  • Document Management
  • Document Storage
  • Electronic Forms
  • Electronic Signature
  • Employee Benefits Administration
  • Employee Database
  • Employee Handbook
  • Employee Management
  • Employee Onboarding
  • Employee Portal
  • Employee Profiles
  • Employee Scheduling
  • Employee Self Service
  • FMLA Administration
  • For Accountants
  • For Cloud
  • For Small Businesses
  • HR Management
  • HSA/FSA Administration
  • Health Insurance Administration
  • Historical Reporting
  • Learning & Development
  • Leave Tracking
  • Mobile Access
  • Multi-Currency
  • Multi-State
  • Offboarding
  • Onboarding
  • Online Benefits Enrollment
  • Online Time Tracking
  • Orientation Workflow Management
  • Payroll Management
  • Payroll Outsourcing
  • Payroll Reporting
  • Performance Management
  • Policy Management
  • QuickBooks Integration
  • Real-Time Data
  • Real-Time Reporting
  • Real-Time Updates
  • Receipt Management
  • Recruitment Management
  • Reminders
  • Reporting & Statistics
  • Reporting/Analytics
  • Role-Based Permissions
  • Self Service Portal
  • Sick Leave Tracking
  • Split Deposits
  • Succession Planning
  • Task Management
  • Tax Calculation
  • Tax Compliance
  • Tax Filing
  • Tax Forms
  • Third-Party Integrations
  • Time & Attendance
  • Time & Expense Tracking
  • Time Off Management
  • Time Off Requests
  • Time Tracking
  • Timesheet Management
  • Training Management
  • Vacation/Leave Tracking
  • W-2 Preparation
  • Wage Garnishment
  • Web-based Deployment
  • Workflow Automation
  • Workflow Management
  • Total features84
  • 1099 Preparation
  • 360 Degree Feedback
  • 401(k) Tracking
  • Access Controls/Permissions
  • Accounting
  • Accounting Integration
  • Activity Dashboard
  • Activity Tracking
  • Alerts/Notifications
  • Applicant Tracking
  • Approval Process Control
  • Archiving & Retention
  • Attendance Tracking
  • Audit Management
  • Audit Trail
  • Benefits Dashboard
  • Benefits Management
  • Billable & Non-Billable Hours
  • Budgeting/Forecasting
  • Certification Tracking
  • Chatbot
  • Check Printing
  • Collaboration Tools
  • Compensation Management
  • Compliance Management
  • Compliance Tracking
  • Configurable Workflow
  • Customizable Reports
  • Customizable Templates
  • Dashboard
  • Data Import/Export
  • Data Visualization
  • Deduction Management
  • Digital Signature
  • Direct Deposit
  • Document Management
  • Document Storage
  • Electronic Forms
  • Electronic Signature
  • Employee Benefits Administration
  • Employee Database
  • Employee Handbook
  • Employee Management
  • Employee Onboarding
  • Employee Portal
  • Employee Profiles
  • Employee Scheduling
  • Employee Self Service
  • FMLA Administration
  • For Accountants
  • For Cloud
  • For Small Businesses
  • HR Management
  • HSA/FSA Administration
  • Health Insurance Administration
  • Historical Reporting
  • Learning & Development
  • Leave Tracking
  • Mobile Access
  • Multi-Currency
  • Multi-State
  • Offboarding
  • Onboarding
  • Online Benefits Enrollment
  • Online Time Tracking
  • Orientation Workflow Management
  • Payroll Management
  • Payroll Outsourcing
  • Payroll Reporting
  • Performance Management
  • Policy Management
  • QuickBooks Integration
  • Real-Time Data
  • Real-Time Reporting
  • Real-Time Updates
  • Receipt Management
  • Recruitment Management
  • Reminders
  • Reporting & Statistics
  • Reporting/Analytics
  • Role-Based Permissions
  • Self Service Portal
  • Sick Leave Tracking
  • Split Deposits
  • Succession Planning
  • Task Management
  • Tax Calculation
  • Tax Compliance
  • Tax Filing
  • Tax Forms
  • Third-Party Integrations
  • Time & Attendance
  • Time & Expense Tracking
  • Time Off Management
  • Time Off Requests
  • Time Tracking
  • Timesheet Management
  • Training Management
  • Vacation/Leave Tracking
  • W-2 Preparation
  • Wage Garnishment
  • Web-based Deployment
  • Workflow Automation
  • Workflow Management

Integrations

  • Total integrations4
  • Deputy
  • Humanity Schedule
  • QuickBooks Online
  • QuickBooks Online Advanced
  • QuickBooks Time
  • Shopify
  • When I Work
  • WooCommerce
  • Xero
  • Total integrations7
  • Deputy
  • Humanity Schedule
  • QuickBooks Online
  • QuickBooks Online Advanced
  • QuickBooks Time
  • Shopify
  • When I Work
  • WooCommerce
  • Xero