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Top Rated Substance Abuse EMR Software with Substance abuse programs therapy

Last updated: May 2026

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40 software options

SimplePractice logo

SimplePractice

Appointment scheduling and reminder solution

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SimplePractice is an all-in-one practice management solution that helps businesses simplify administrative tasks, such as scheduling, billing, and documentation, allowing health and wellness professionals to focus on providing excellent client care. The platform offers a robust set of features designed to help practitioners thrive.

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Opus logo

Opus

Behavioral health software built for teams that scale.

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Opus is a robust behavioral health software for treatment facilities and group practices of 5+ clinicians. One platform unifies EHR, CRM, and RCM — with AI-powered documentation, multi-provider scheduling, insurance verification, telehealth, and claims processing for UB-04 and CMS-1500 forms. Buil

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NextGen Behavioral Health Suite logo

NextGen Behavioral Health Suite

Cloud-based EHR and medical practice management software

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NextGen Behavioral Health Suite is a cloud-based software designed to help medical organizations manage and maintain electronic health records (EHR) of patients’ physical, behavioral, and oral health. Patients can schedule appointments and communicate with physicians via messaging.

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Remedly logo

Remedly

Cloud software for Mental Health and Aesthetic practices

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Spend more time with your patients and not their charts. Remedly's all-in-one Practice Management combines EHR, RCM and Medical Billing Module, Reporting, and more in a single platform. As a cloud-based web application, it is also future proof – new upgrades happen instantly and on continuous basis!

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CarePaths EHR logo

CarePaths EHR

E-Health Records & Practice Management System w/ Telehealth

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ONC-Certified & HIPAA compliant cloud-based EHR and practice management platform with telehealth. Accept e-referrals, FREE claim submissions, online payments, E-statements, online scheduling, appointment reminders, clinical documentation, customizable forms, secure messaging, outcomes monitoring.

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EHRYourWay logo

Streamlined care for mental health professionals.

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EHR YOUR WAY is a fully integrated behavioral health and clinical care EHR software. It is configurable for mental health and clinical health specific needs and is an ONC certified cloud-based EHR. EHR YOUR WAY is trusted by mental health professionals nationwide and is suitable for behavioral health agencies with 15 or more users.

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Kipu logo

Behavioral health platform for treatment centers

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Kipu offers software for behavioral health organizations, integrating EMR, CRM, RCM, and GRC tools. The platform streamlines workflows with customizable documentation templates, secure messaging for care coordination, and integrated patient billing, while providing compliance management tailored to behavioral health facilities.

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Practice Mate logo

Practice management software for healthcare organizations

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Practice Mate by Office Ally is a HIPAA-compliant practice management solution that seamlessly integrates with EHR 24/7 to manage Substance Abuse electronic medical records. Get started today.

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Zanda logo

Practice management software for allied health professionals

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Zanda is a practice management platform designed to help allied health professionals run clinic operations with calendar management tools, automated appointment reminders, treatment note templates, invoicing, online bookings, 2-way SMS chat, telehealth, secure AI-powered session transcription & more

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BestNotes logo

Cloud based electronic health records solution for clinics

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BestNotes is a cloud based electronic health record management solution for the behavioral health and substance abuse industry. Features include: scheduling, patient portal, audit-compliant documentation, medication administration, outcome tracking, e prescribing, lab tracking, and reporting

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Advanced Data Systems logo

AI-enabled healthcare software for medical practices

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Advanced Data Systems provides comprehensive healthcare software solutions including Practice Management, Electronic Health Records, and Radiology Information Systems. The ONC-certified platform features AI-driven tools like MedicsScribeAI for voice-to-text documentation and integrates scheduling, billing, and clinical documentation functionalities. The system serves multiple medical specialties with customizable workflows designed to enhance operational efficiency.

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Sevocity logo

ONC-certified cloud EHR with provider-level customization

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Sevocity is an ONC-certified, cloud-based EHR for independent and group practices. Provider-level customization, HL7 lab and imaging integrations, ePrescribing with EPCS, AI ambient documentation, real-time eligibility verification, and electronic claims are included.

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Qualifacts Insync logo

Cloud-based EHR and practice management software.

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Improve patient care with Qualifacts InSync's integrated, user-friendly, cloud-based EHR solution tailored to your practice. Includes EHR, practice management, billing, telemedicine, e-prescribing, and patient portal for practices of any size.

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Alleva logo

We're the friendliest EMR platform around. Book a Demo!

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Our state-of-the-art platform will take your center into the 21st century and streamline the entire process of EMR. Our platform provides more efficient workflows, reducing burn-out, and improving the quality of care. Insights offers real-time data for better business decisions and easier reporting.

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MedEZ logo

Electronic health record (EHR) suite

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MedEZ is a perfect fit for Behavioral Healthcare facilities, Inpatient and Outpatient IOP / PHP programs & Substance Abuse clinics.

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Checkpoint EHR logo

All-in-one behavioral patient care.

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Checkpoint EHR is a 3-in-1 solution for behavioral patient care, offering electronic health records, clearinghouse solutions, and billing services. It provides a trusted and simple-to-use electronic health record software with features like unlimited users, hands-free billing, client reminders, and dedicated support at no extra cost.

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Healthie logo

HIPAA compliant health records for providers

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Healthie is a HIPAA-compliant electronic health record platform for health and wellness providers, including private practices, group practices, and digital health startups. It offers cloud-based charting, scheduling, billing, telehealth, patient engagement tools, and workflow automation. Features include an AI scribe, multi-provider support, insurance management, and integrations with third-party apps like wearable devices and business intelligence tools.

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NueMD logo

Electronic health record software for medical practitioners

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NueMD helps medical practices streamline the administrative operations to spend more time with patients and less time on paperwork. It helps create patient records, scan and attach insurance and ID cards and instantly verify insurance eligibility.

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PIMSY Mental Health EHR logo

The EHR built from the ground up for behavioral health.

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EMR built for substance use treatment. 42 CFR Part 2 compliance is built into the platform, not bolted on. Group notes, MAT support via ePrescribing, eMAR for residential programs, and a managed RCM service that understands behavioral health payer rules.

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Trac9 Informatics logo

Mental Health EHR software

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Leading the way in rehab success with predictive analysis and personalized care. Our software transforms clinics, providing comprehensive assessments and individualized plans for sustained sobriety. Join us in shaping a brighter future for recovery.

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Sunwave logo

Behavioral health tool for substance abuse treatment centers

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Sunwave is a cloud-based behavioral health software designed to help substance abuse treatment centers and mental health facilities manage patient records, admissions, billing, and more.

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Community CareLink logo

Case management software - from intake to impact.

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Streamline care coordination with Community CareLink. Track outcomes, streamline reporting, and improve efficiency. Book a demo today!

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AccuMed logo

Behavioral health and substance use EHR solution

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AccuMed is a behavioral health and substance use EHR solution that includes clinical EMR, billing, reporting, practice management, patient portal, and telehealth processes. It includes a configurable rules engine, a workflow engine, security profiles, configurable forms, notes, treatment plans, reports, and more.

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RXNT logo

Cloud-based Practice Management, EHR, and eRx Software

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RXNT is an integrated Clinical & Practice Management platform for healthcare professionals which helps you manage patient records and medical billing, e-prescribe medications, and schedule doctors, patients, and resources. Elevate your practice with our cloud-based EHR, eRx, and PM software.

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NextGen Enterprise logo

Health records platform for medical practices

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NextGen Enterprise is a comprehensive healthcare information management system designed specifically for mid-size to enterprise medical practices. The platform delivers an integrated clinical and financial solution that provides healthcare organizations with the flexibility they require while offering the convenience and communication capabilities patients expect.

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