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Top Rated Accounting Software with Shopify - Page 3

Last updated: May 2026

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75 software options

EBizCharge logo

Accept payments faster in your ERP, CRM & eCommerce platform

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EBizCharge is the leading embedded payments application for businesses to accept payments directly inside their ERP, CRM, or eCommerce system. Trusted by 20,000 companies to automate billing, get invoices paid faster, and keep payments fully synced.

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AccountMate logo

Customizable accounting software with inventory tracking

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Modifiable custom report builder, Accounts Payable, Accounts Receivable, General Ledger, Bank Reconciliation, Consolidated Ledger, Payroll, Purchase Order, Sales Order, Upsell Management. Modifiable Business management software designed to meet the needs of small to medium-sized businesses.

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Brightpearl logo

Retail operations management platform for brands & retailers

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Brightpearl’s integrated accounting is built specifically for retail and wholesale businesses, providing real-time insight into sales performance, profitability and costs across all your channels, all from the same system you use to manage sales, purchasing, inventory, customers and suppliers.

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CustomBooks logo

Accounting solution for SMBs

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CustomBooks™ is a cloud-based accounting solution, which helps small to midsize businesses manage purchase, sales orders and inventory across multiple channels. Key features include shipment tracking, quote creation, data import, costing, item tagging, billing, and reporting.

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Priority Software logo

ERP Should Be Easier

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End-to end solution, including accounting, tax regulations, human resources, reporting, project management and more

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Cin7 Core logo

Inventory management software for SMBs

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Cin7 Core is a cloud-based, inventory and order management application for SMBs which offers a complete back end management solution with purchasing, sales, warehouse management, and light manufacturing features as well as shipping, eCommerce and payment gateway integrations

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QuickBooks Online logo

Accounting and business management software

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QuickBooks Online offers accounting with financial dashboards, invoice creation, online payment acceptance, expenses tracking, payroll & more.

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Cin7 Omni logo

Cloud-based inventory management solution

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Cin7 Omni makes complex retail and wholesale simple, with all-in-one Inventory Management, POS, Direct EDI Integration and 3PL integration.

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xTuple logo

Inventory Management Solutions for Growing Manufacturers

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Inventory Management Solutions for Manufacturers who want to GROW their Manufacturing Business. We're helping manufacturing and inventory-centric companies use management software and best practices to grow their business profitably.

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Saasu logo

Small business online accounting

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Online accounting made in Australia for small business. Bank feeds, invoices, expenses, cashflow, inventory
and single touch payroll from $15 per month.

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Dynamics 365 Business Central logo

Enterprise resource planning for SMBs, formerly Dynamics NAV

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Microsoft Dynamics 365 Business Central, formerly Dynamics NAV, is an enterprise resource planning (ERP) solution for small and medium sized businesses. The platform enables businesses to manage finances, projects, sales, customer relationships, manufacturing, supply chains, analytics, and more.

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Akaunting logo

Accounting software for small and midsize businesses

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Akaunting is an accounting software designed to help businesses create estimates and invoices, track income and expenses, view reports, and more. The platform enables managers to enable, disable, delete, and export records in bulk.

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Revolut Business logo

Expedite your expenses with the all-in-one business account

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Revolut Business is designed to streamline your business operations. Scale — and save — with multi-currency accounts, company cards, spend management tools, seamless integrations, and more. Join the hundreds of thousands of businesses worldwide who use Revolut Business to expand with ease.

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sevdesk logo

Web-based accounting platform with iOS and Android apps.

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sevdesk is a web-based accounting platform for entrepreneurs and small businesses. Basic features include the management of invoices, quotes, reminders, products, customers, and tasks. sevdesk also offers a dashboard and reporting functionalities.

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Webgility logo

Eliminate busywork and sell more in more places.

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Webgility syncs customer information, sales tax, fees, and expenses between your sales channels and QuickBooks account.

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MYOB Business logo

Online accounting & payroll for every business

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Online accounting software that gives an accurate view of your cash flow and makes tax time obligations easier.

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bexio logo

Swiss back-office management tool for SMBs and accountants

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bexio is a back-office app for SMBs in Switzerland. It enables self-employed workers, small business owners, and start-ups to manage administrative tasks remotely with online banking, reconciliation, and payroll tools. It can create quotes, orders, QR invoices, and connect with accountants.

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Microsip logo
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ERP solution

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Microsip is an ERP system made for companies to maximize their potential. It helps businesses take control, make the best decisions, and achieve their goals. The ERP system includes modules for payroll, accounting, inventory, and more.

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Vencru logo
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All-in-one inventory management and accounting software

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Vencru is a inventory management and accounting software for growing retail and wholesale businesses.

It helps product-based businesses manage sales, stock, suppliers, customers, and finances in one simple system - without juggling multiple tools.

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Silvasoft logo
(0)

Online booking and invoicing solution

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Silvasoft is an accounting solution, designed to help businesses in the Netherlands and Belgium manage bookkeeping and invoicing. It also offers support for business management, with tools such as time registration, inventory tracking, personnel management, project management, agenda & a CRM tool.

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AccelGrid logo
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Business management suite with POS, CRM, and accounting

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AccelGrid is a cloud-based solution that helps manufacturing, retail, and distribution businesses automate processes for customer relationship management, procurement, inventory management, point of sale, accounting, process automation, and more.

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Cratoflow logo
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A no-code automated financial workflow solution.

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Cratoflow is an integrated platform that performs automated data entry, advanced reconciliation algorithms, and customizable workflows, which sync directly to an accounting system for complete financials.

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Dailybiz logo
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The management software for VSEs & SMEs

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Dailybiz is a SaaS software that optimizes business management thanks to complete functional coverage: sales, purchases, CRM, accounting, business management and taxation. Flexible & customizable solutions according to the problems of each company.

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Rompslomp logo
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Accounting, billing and invoicing solution

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Rompslomp is a Dutch accounting software designed to help freelancers manage and streamline invoicing, billing, customer data and more. The centralized platform allows self-employed professionals to utilize customizable layouts to create offers and convert quotations into invoices.

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Osome logo
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Expert accountants + simple software = financial admin, done

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Expert accountants + simple software = financial admin, done. Osome is an online bookkeeping and accounting firm that sorts all the boring admin for your business so you can focus on growing: We cover all industries, with specialisation in E-commerce business.

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