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Top Rated Payment Processing Software with Microsoft 365

Last updated: May 2026

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16 software options

Zoho Billing logo

Zoho Billing

End-to-end billing solution built for every business model.

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Simplify the payment process with Zoho Billing's multiple payment choices, including cards, bank transfers, and PayPal.

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Acuity Scheduling logo

Online appointment scheduling software and assistant

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Acuity Scheduling is an online appointment scheduling solution that allows clients to self-schedule appointments or classes online, complete custom forms, receive confirmation notifications and reminders, and pay or donate with a credit card.

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Zoho Invoice logo

Online invoicing tool for freelancers and SMBs.

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Zoho Invoice is an online invoicing software for freelancers and small to medium enterprises (SMEs). It helps you craft professional invoices, send payment reminders, and get paid faster online.

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HoneyBook logo

Client management for freelancers & SMBs

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Everything you need to run your business: proposals, contracts, invoicing, payments, and more.

Get started with a 7 day free trial today.

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Clio logo

Cloud-based legal practice management tool for law firms.

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Clio is a comprehensive legal practice management software that helps law firms streamline their operations. The platform offers case management, client intake, document automation, and legal accounting features, all integrated into one system. With built-in AI capabilities through Clio Duo, legal professionals can efficiently summarize documents and access matter details while maintaining client communication through a dedicated portal.

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PEX logo

Expense management for controlling employee spending

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PEX is an expense management solution for business that integrates your accounting software with prepaid debit cards to control and analyze employee spending

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TUIO logo

Cloud-based school and childcare management system

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TUIO simplifies tuition collection with online payments, same-day payouts, and real-time financial visibility. Streamline your billing process with TUIO today.

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Fortis logo

Embedded payments and invoicing for B2B workflows

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Fortis is a payment processing and invoicing solution that helps businesses receive payments, monitor transactions, capture eSignatures, send payment requests, and more on a centralized platform. It enables team members to create one-time and recurring invoices in compliance with PCI-DSS guidelines.

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ezyCollect by Sidetrade logo

Accounts receivable automation software

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Accept major credit cards, auto-surcharge fees, add Pay Now buttons to digital invoices, accept B2B Pay Later

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QuickBooks Enterprise logo

Enterprise accounting, FSM and inventory management solution

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QuickBooks Desktop Enterprise is an accounting software for small businesses which provides users with real-time access to customer, employee, and vendor information. The software includes tools for managing inventory, shipping, sales orders, pricing, tasks, invoicing, reporting, and more.

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Frisbii logo

Subscription management, billing, payments, and analytics

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Frisbii is a recurring billing platform made in Europe, providing businesses with the right means to automate, streamline and scale their payment, billing and recurring relationship processes for business growth, increased retention and predictable revenue.

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Tipalti logo

Finance automation and accounts payable solution

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Automate payments to domestic and international suppliers, freelancers, contractors, or affiliates.

Pay in 120 currencies, to 190 countries, via 12 payment methods. Real-time ERP integrations with NetSuite, Quickbooks, Xero and more enable real-time payment reconciliation.

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TimeSolv logo

Cloud-based legal billing and invoicing solution

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TimeSolv is a cloud and mobile-based solution for lawyers and other professional firms that assists with time tracking, billing management, and more. It offer multiple timers to concurrently manage time on several matters. It offers conflicts management to search for related parties.

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Zoho Books logo

Online accounting software for businesses of all sizes

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Zoho Books is an online accounting software designed to streamline back office operations, automate workflows, and allow secure collaboration with accountants

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Thryv logo

All-in-one management solution built for small business

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Thryv is an AI-powered CRM and marketing platform helping small businesses capture leads, automate follow-ups, and grow.

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MyndAPX logo
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AP automation software that streamlines invoice processing

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MyndAPX is AP automation software designed for accounts payable processing. With a focus on transforming operations and optimizing collaboration, MyndAPX offers a comprehensive solution to lower costs, ensure compliance, and streamline workflows.

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