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Top Rated Food Manufacturing Software with Shopify

Last updated: August 2026

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20 software options

MRPeasy logo

Cloud ERP system for growing manufacturers and distributors

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Manage and track your food manufacturing processes with ease. MRPeasy integrates all aspects of business from inventory management and production planning to traceability and sales. Seamlessly track batches, improve product quality, ensure regulatory compliance, and much more.

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BatchMaster ERP logo

All-in-one, AI-enabled ERP. From formula to financials

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All-in-one, AI-enabled ERP for process manufacturers from formula to financials. Formulation, quality, compliance, traceability, inventory, financials, CRM, and sales in one system. Also runs as a manufacturing layer on QuickBooks, Dynamics 365 Business Central, SAP Business One, or Sage.

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Striven logo

Striven is a cloud-based, all-in-one business management ERP

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Striven gives food manufacturers connected tools for production tracking, lot-level traceability, ingredient inventory, and job costing, so every batch ties back to accurate financials and compliance documentation stays audit-ready end-to-end.

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Fusion Operations logo

Manufacturing execution system (MES) for SMBs.

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Fusion Operations by Autodesk is the complete one-stop-solution for production environments that helps SMBs leverage the power of data.

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ERPAG logo

ERP for small and mid-sized companies

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ERPAG is a cloud-based ERP system for small and mid-sized companies, which covers sales, purchasing, inventory, production, payroll, business analysis, and more

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Digit logo

Cloud-based manufacturing and inventory management platform

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Digit is a cloud-based ERP platform that helps small manufacturers manage inventory, production, sales, purchasing, and fulfillment.

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Acumatica Cloud ERP logo

Cloud-based enterprise resource planning software

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Acumatica Cloud ERP optimizes food manufacturing with Order Management, Production Scheduling, and Purchase Orders. Quality Control ensures standards, while Resource Management and Reporting/Analytics provide insights to enhance efficiency and scale operations.

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Aquilon ERP logo

Integrated enterprise resource planning (ERP) solution

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Aquilon ERP is an integrated application suite for SMBs offering capabilities in CRM, accounting, supply chain management, payroll, and distribution management

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Katana Cloud Inventory logo

Real-time inventory management insights to prevent stockouts

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Katana’s cloud inventory platform covers the live inventory, production, accounting, and reporting features that give businesses the knowledge they need to make the right decisions.

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Brahmin Solutions logo

One Cloud Inventory Management and MRP Software

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Brahmin Solutions is an integrated end-to-end inventory management and MRP solution crafted for small to mid-sized businesses.

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NetSuite logo

AI-powered cloud-based business management suite

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NetSuite is an AI-powered cloud-based business management suite. It helps organizations streamline their operations and gain real-time insights into their performance. The suite caters to a range of industries such as manufacturing, retail, and professional services.

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Zami logo

Platform for food and wholesale operations

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Zami gives food manufacturers full production traceability, real-time raw material and finished goods inventory, and batch costing — all connected to sales and delivery. Track ingredients, monitor stock as it's used, and see true margins per batch, without the complexity of legacy manufacturing ERPs

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iNECTA Food logo

All-in-one ERP for the food and beverage industry

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inecta is a cloud-based, end-to-end food ERP solution built on Microsoft Dynamics 365 Business Central. Designed exclusively for food and beverage companies, it handles everything from production and inventory to traceability, QA, forecasting, and compliance.

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NutraSoft logo

Food Management Software: ERP, MRP & Regulatory Compliance

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NutraSoft: Food Management Software for SMEs. Features Nutrition Analysis, Lot Traceability, and Manufacturing Resource Planning (MRP). Achieve Regulatory Compliance and ensure compliance with laws and regulations. Streamline inventory management and financial reporting in one software solution.

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Fishbowl logo

Simplify, automate, and elevate your inventory management

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Designed with simplicity and efficiency in mind, Fishbowl’s complete manufacturing and inventory management solution transforms the inventory process and uses automation to help growing businesses make strategic and precise decisions based on real-time data and cut costs.

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xTuple logo

Inventory Management Solutions for Growing Manufacturers

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Inventory Management Solutions for Manufacturers who want to GROW their Manufacturing Business. We're helping manufacturing and inventory-centric companies use management software and best practices to grow their business profitably.

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Supply'd logo

Connected ERP built for food operations

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Supply’d is a cloud ERP for food manufacturers, bakeries, distributors and multi-site food businesses, connecting orders, purchasing, inventory, production, warehousing, quality, delivery and reporting.

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AcctVantage ERP logo

ERP for managing production and distribution operations

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AcctVantage ERP is an agile, pain-free ERP consolidating accounting, warehouse management, CRM, and business intelligence. Tailored for mid-sized businesses with inventory looking to grow with minimal disruption (without adding staff). Backed by a responsive U.S. support team.

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Shipedge logo

Web-based warehouse, order management and fulfillment system

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Shipedge empowers 3PLs, Distribution Centers, and eCommerce with powerful WMS, OMS, inventory, and shipping tools. Simplify operations, save time, and delight customers with Shipedge's simple online solutions.

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Axolt logo

Axolt — Run your business operations inside Salesforce.

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Axolt is a Salesforce-native ERP that helps businesses manage inventory, manufacturing, supply chain, logistics, finance, and order operations in one connected platform, giving teams real-time visibility and control as they scale.

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