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Top Rated Manufacturing Inventory Management Software with Shopify

Last updated: September 2026

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39 software options

Sutton logo

Cloud-based manufacturing and inventory management platform

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Sutton is an AI-native operating system for manufacturers and distributors, combining a powerful all-in-one core with the flexibility to build custom apps in natural language.

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Fusion Operations logo

Manufacturing execution system (MES) for SMBs.

Fusion Operations by Autodesk is the complete one-stop-solution for production environments that helps SMBs leverage the power of data.

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inFlow Inventory logo

All-in-one inventory management software for small business.

inFlow Inventory is an all-in-one inventory and order management solution for small and medium businesses. We offer the software to track products, sales, and customers, and also support hardware to help you update your stock levels while you work.

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ERPAG logo

ERP for small and mid-sized companies

ERPAG is a cloud-based ERP system for small and mid-sized companies, which covers sales, purchasing, inventory, production, payroll, business analysis, and more

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aACE logo

Accounting, CRM, and ERP built for Medium-sized Businesses.

aACE is a comprehensive tool, tailored to the needs of SMBs, that seamlessly supports sales, operations, and accounting. As the letters in our name suggest, aACE unifies Accounting, Customer relationship management (CRM), and Enterprise resource planning (ERP) into one integrated package.

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MRPeasy logo

Cloud ERP system for growing manufacturers and distributors

Versatile inventory management for small manufacturers. MRPeasy is a powerful yet affordable manufacturing ERP system trusted by 2000+ companies worldwide. Gain full control over your stock, procurement, order management, traceability, shop floor, and much more.

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C2W Inventory Management System logo

Inventory tracking, control, and management system

C2W Inventory Management System consolidates inventory, sales, purchasing, and reporting into a unified platform, offering real-time stock updates and multi-warehouse functionality. It includes a mobile SmartScan barcode system to streamline inventory processes. The solution includes automated reorder point settings and is compatible with Geek+ Robotics automation for management.

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ApparelMagic logo

Apparel ERP

ApparelMagic is an enterprise resource planning (ERP) & product lifecycle management (PLM) platform for apparel companies. The system lets users plan and track designs from initial concept to final approval including design management, material sourcing, cost and supplier management, and more.

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Aquilon ERP logo

Integrated enterprise resource planning (ERP) solution

Aquilon ERP is an integrated application suite for SMBs offering capabilities in CRM, accounting, supply chain management, payroll, and distribution management

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Fulcrum logo

Cloud-based manufacturing ERP, MRP & MES solution

Fulcrum is a modern Manufacturing SaaS platform that replaces ERP, MRP, and MES. Built for small and mid-sized manufacturers, it streamlines quoting, scheduling, inventory, and quality in one system—boosting efficiency, automating workflows, and improving profitability.

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StockTrim logo

Smart AI based inventory forecasting software for SMB's

StockTrim is a cloud-based inventory forecasting software designed to help small to midsize businesses leverage machine learning technology and artificial intelligence (AI) algorithms to streamline demand planning processes.

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Katana Cloud Inventory logo

Real-time inventory management insights to prevent stockouts

Katana’s cloud inventory platform covers the live inventory, production, accounting, and reporting features that give businesses the knowledge they need to make the right decisions.

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ALERE logo

Built for the floor. Trusted with the books.

Inventory that matches the shelf. Barcoded capture at the source, counts that adjust automatically as sales, purchase, and work orders move, and lot, serial, and trait traceability with expiration and degradation. Multi-location bins and stores, five costing methods built in. Perpetually licensed.

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Shipedge logo

Web-based warehouse, order management and fulfillment system

Shipedge empowers 3PLs, Distribution Centers, and eCommerce with powerful WMS, OMS, inventory, and shipping tools. Simplify operations, save time, and delight customers with Shipedge's simple online solutions.

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AcctVantage ERP logo

ERP for managing production and distribution operations

AcctVantage ERP is ideal for manufacturing inventory management, offering integrated solutions for stock control, accounting, and sales to boost manufacturing efficiency.

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GOIS logo

Inventory & Order Management System w/QuickBooks Integration

GOIS is a cloud-based inventory and order management system that runs on Web & Mobile and integrates with QuickBooks Online & Desktop.

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Brahmin Solutions logo

One Cloud Inventory Management and MRP Software

Brahmin Solutions is an integrated end-to-end inventory management and MRP solution crafted for small to mid-sized businesses.

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Xemelgo logo

THE FACTORY FLOOR AT YOUR FINGERTIPS

Real-time inventory tracking for manufacturers - reduce shrinkage, streamline counts, and keep production running smoothly.

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Axolt logo

Axolt — Run your business operations inside Salesforce.

Axolt is a Salesforce-native application that unifies supply chain, inventory, manufacturing, finance, and operations into one smart, scalable solution. Trusted by fast-growing businesses across industries, Axolt delivers real-time visibility, intelligent automation, and seamless collaboration.

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StartProto logo

Genuinely Enjoyable Cloud Manufacturing Software.

Our manufacturing software effortlessly integrates with your established workflows. It has been developed by a team of dedicated professionals who are fully committed to ensuring your success.




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Certus Food ERP logo

Read more about Certus Food ERP

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AMT ERP logo

ERP suite for managing sales orders, inventories & payments

AMT ERP is an enterprise resource planning suite designed to help organizations streamline production planning, order management, and supply chain operations. It enables manufacturers to configure workflows as per business requirements and calculate gross margins for customers, orders, and products.

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InStyle Apparel Software logo

ERP for apparel manufacturing & distribution companies

InStyle is a web-based apparel software which covers the full product lifecycle, combining solutions for enterprise resource planning (ERP), product data management (PDM), material requirements planning (MRP), customer relationship management (CRM), eCommerce, and electronic data interchange (EDI)

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iNECTA Food logo

All-in-one ERP for the food and beverage industry

inecta is a cloud-based, end-to-end food ERP solution built on Microsoft Dynamics 365 Business Central. Designed exclusively for food and beverage companies, it handles everything from production and inventory to traceability, QA, forecasting, and compliance.

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BatchMaster ERP logo

All-in-one, AI-powered ERP. From formula to financials

BatchMaster is an all-in-one ERP connecting manufacturing and inventory: material availability for every multi-level BOM is checked against inventory before a batch releases, with barcode-confirmed production issues and real-time Power BI visibility into stock value and reorder points.

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