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Accounting Software with Payment Reconciliation (2026) - Page 2

Last updated: April 2026

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60 software options

Bookkeep logo

Automated ecommerce and retail bookkeeping just got smarter.

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Untangle the accounting and sales tax for your multi-channel ecommerce or retail business! Automatic, accrual-based daily sales and payment journal entries into QBO, Xero, Sage Intacct, or Zoho Books - for 60+ ecommerce platforms as well as retail, restaurant, and cannabis POS solutions!

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Crunch logo

You live life. We do the numbers.

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Crunch is a groundbreaking online accountancy firm for freelancers, contractors and small businesses. By combining accredited, award-winning in-house accountants with real-time cloud software.

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Biller Genie logo

Automated. Integrated. Simplified.

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Biller Genie seamlessly connects to your accounting software and automatically sends invoices, reminders and past due notifications via email & paper mail. Your customers can pay invoices online via credit card, ACH or Apple Pay and payments are automatically closed in your accounting software.

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PBS Accounting logo

Ge more done with Passport Business Solutions

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Passport Business Solutions (PBS) Accounting software is designed for growing small to mid-sized US companies ranging from 6 to 100 million in annual sales. Fully integrated professional level accounting software that fits a wide range of businesses. On-premise.

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Big E-Z Accounting for Google Sheets logo

Manage finances, stay organized & collaborate with your team

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The Big E-Z Accounting for Google Sheets Add-on offers expense tracking, invoicing, clear & concise reports, cash flow management & collaboration.

Big E-Z saves you time & money over other programs on the market.

Try it Free for 14 days! Free 3-day custom setup with purchase. www.bigez.com

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OneBill logo

Lead to Revenue Redefined

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OneBill is a revenue management software that provides businesses with tools to streamline subscription management and billing processes. It enables to manage administrative operations, including automated order provisioning & activation, CPQ, revenue reporting, commission management, etc.

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Quipu logo

The invoicing and treasury software for freelancers and SMEs

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Quipu is the all-in-one solution that allows you to control invoicing, treasury, taxes and customers in a simple and intuitive way.

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Indy logo

All in one application for freelancers !

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Online application that helps self-employed automate accounting, from expense tracking to tax filling and bank reconciliation.

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CustomBooks logo

Accounting solution for SMBs

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CustomBooks™ is a cloud-based accounting solution, which helps small to midsize businesses manage purchase, sales orders and inventory across multiple channels. Key features include shipment tracking, quote creation, data import, costing, item tagging, billing, and reporting.

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PAN Hospitality logo

Inventory control and channel management software

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PAN Hospitality Suite is a reservations management software that helps businesses manage properties, bookings, accounting, channels, stock control, and more. The platform allows managers to process transactions, manage inventory, and generate sales reports.

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Corcentric logo

Proven results. Built together.

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Corcentric’s AP and AR solutions streamline your entire invoice lifecycle—automating workflows, improving cash flow, reducing risk, and delivering real-time visibility across your payables and receivables.

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Fincent logo

Financial management and bookkeeping software

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Fincent is a financial management software that helps small businesses automate and handle bookkeeping, invoicing, payments, reporting, tax preparation, and tax filing.

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Clay logo

Financial and accounting automation platform

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Clay is a financial and accounting software platform that helps businesses automate bank reconciliations, generate financial reports, and centralize business information. The platform features automatic bank reconciliation, cash flow projections up to twelve months, client and vendor management, and automated accounting entries. It includes integrations with multiple banks, tax authorities, and ERP systems, along with an AI assistant for user support.

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Xledger logo

Empower ambition with Xledger.

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Xledger is a true-cloud financial software that serves over 18,000 customers worldwide. For over 20 years, Xledger has been a leader in automated accounting software and has been empowering ambitious companies around the globe.

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Webgility logo

Eliminate busywork and sell more in more places.

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Webgility syncs customer information, sales tax, fees, and expenses between your sales channels and QuickBooks account.

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Pennylane logo

All-in-one platform for finances, accounting, and banking

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Pennylane's accounting solution automates data collection and transaction categorization while ensuring compliance with French standards.

With AI assistance and seamless integrations, it transforms accounting from a compliance burden into a strategic asset for 350,000+ businesses.

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Adfinity logo

Accounting and financial management software

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Adfinity is one of the most complete accounting software packages, offering a large variety of advanced financial management features. Adfinity brings added value in reporting, automation, digitalization of workflows and paperless working.

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SapphireOne logo

Enterprise Resource Planning software

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SapphireOne streamlines financial management with Accounts Receivable, Payable, and General Ledger, ensuring precise reporting and compliance. Real-time access and automation reduce errors, enhancing strategic decision-making. Its scalability and customisation support growth and boost productivity.

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InvoiceSherpa logo

Invoice payment reminder app

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InvoiceSherpa is an invoice management and debt recovery application that helps to track and follow up with overdue payments. It integrates with major accounting apps, automatically extracting invoice and customer data from the core accounting software, and updating the data when payments are made.

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CenterPoint Accounting logo

Accounting Software for Growing Businesses

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Accounting Software for growing businesses. CenterPoint Accounting Software works especially well for those outgrowing basic accounting systems, those requiring flexible financial reporting, and the management of multiple companies.

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Crunched logo

Accounting & bookkeeping for small businesses

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Crunched is an accounting software helping businesses gain valuable insight into income and expense trends with bookkeeping, invoices and payment collection

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Regate logo

All-in-one financial management platform

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Regate makes financial management easy while avoiding the use of multiple tools.

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Flexi Software logo

Accounting Solutions That Power Business

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Flexi combines the strength of an accounting platform with flexibility and support to meet unique business needs. The suite of accounting and workflow automation solutions have helped enable brands to simplify and automate accounting for over 30 years.

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SMART Suite logo

An Embedded Payment Portal Like No Other.

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SMART Suite powered by Transcard offers an all-in-one payment processing solution. With SMART Suite, businesses can manage insights, process payments, and onboard all in one place.

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TrulySmall Accounting logo

Simple, time-saving accounting software for small businesses

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A time-saving accounting solution that automates bookkeeping tasks for small business owners.

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