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Medical Accounting Software for Linux

Last updated: February 2026

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23 software options

QuickBooks Enterprise logo

Enterprise accounting, FSM and inventory management solution

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QuickBooks Desktop Enterprise is an accounting software for small businesses which provides users with real-time access to customer, employee, and vendor information. The software includes tools for managing inventory, shipping, sales orders, pricing, tasks, invoicing, reporting, and more.

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Dynamics 365 logo

ERP and CRM applications from Microsoft

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Microsoft Dynamics 365 is a multi-language, multi-currency enterprise resource planning (ERP) software. The solution is designed for midsize and larger companies, and is fully customizable and extensible through its rich development platform and tools.

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Patriot Accounting logo

Cloud-based accounting and payroll software

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Patriot Accounting is an online accounting solution that allows businesses to track and manage transactions, import bank transactions, reconcile accounts, send estimates & invoices & more.

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SAP S/4HANA Cloud logo

A complete, intelligent ERP system for enterprises.

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SAP S/4HANA Cloud is a cloud-based intelligent ERP system specifically developed for companies in all industries offering them a broad and flexible functionality.

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Striven logo

Collaborative ERP for business process management

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Striven is a comprehensive business management software suite. It provides a range of features to support organizations across various industries, such as construction, manufacturing, professional services, and field services. The software offers real-time access to critical business data, helping to eliminate issues with missing, lost, or inaccurate information.

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Sage 100 logo

Enterprise resource planning software

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Sage 100 is a customizable business management solution that helps businesses automate financials, operations, and payroll, providing complete visibility into the operations. Sage 100 grows with the business, allowing teams to scale and meet specific needs as a small or medium-sized enterprise.

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Prophix One logo

Automate & streamline corporate performance management

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Prophix allows organizations to automate & integrate their budgeting, planning, forecasting, financial consolidation, & reporting activities on one platform

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JD Edwards EnterpriseOne logo

Database of resource planning software for enterprises

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Oracle's JD Edwards EnterpriseOne is an integrated applications suite of comprehensive enterprise resource planning software that combines business value, standards-based technology, and deep industry experience into a business solution with a low total cost of ownership. EnterpriseOne is the first ERP solution to run all applications on Apple iPad. JD Edwards EnterpriseOne also delivers mobile applications.

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Multiview ERP logo

Enterprise resource planning (ERP) solution

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Multiview is a highly-scalable modular ERP software for scaling organizations which require more automation, control and insight into their operations. A fully-integrated suite of financials ranges from core accounting, budgeting and forecasting to materials management and workflow approvals.

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Sage 300 logo

Cloud-based business management software

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Sage 300cloud is a cloud-based business management solution design to help small to medium-sized companies manage their business without requiring traditional ERP software. The system supports multiple companies, currencies, and languages to simplify results reporting, bank reconciliation, and more.

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ActivityHD logo

ERP software for accounting and business management

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ActivityHD is an enterprise resource planning (ERP) solution that assists businesses of all sizes with payroll processing, accounting, business management and more.

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SBS Financials logo

Accounting software for the financial businesses

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SBS Financials is an accounting software designed to help businesses plan and manage budgets, approval workflows, billing, invoicing, and bank reconciliations. The platform enables managers to access financial information and track progress against key performance indicators (KPIs).

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AccuFund Accounting Suite logo

Online and Onsite Accounting Software for Nonprofits & Govt

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AccuFund’s complete nonprofit financial management system improves all critical aspects of your nonprofit, from budget development to grants management to payroll and HR and accounts payable, selecting the modules that your nonprofit needs now and add others in the future as needs evolve.

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Focus X logo

Enterprise software suite.

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Data-centric Fourth Era ERP with Embedded AI

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Denali Business logo

The Accountant's Accounting Software

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Cougar Mountain Software develops leading on-premise accounting solutions for small to mid-sized businesses.

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InvoiceBerry logo

Online invoicing & expense tracking for SMBs and freelancers

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InvoiceBerry offers online invoicing & expense tracking for small businesses, freelancers and sole traders

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SapphireOne logo

Enterprise Resource Planning software

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SapphireOne streamlines medical accounting with tailored features for healthcare, ensuring accurate billing, invoicing, and compliance. Real-time data integration enhances efficiency in managing patient accounts and claims. Customisable reports offer insights, while scalability supports growth.

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AltaPoint logo

Medical practice management and billing software

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AltaPoint is a comprehensive practice management software designed to streamline the operations of growing medical practices. The software offers an interface that provides access to essential features such as patient information, billing and ledgers, notes, documents, and appointment scheduling. AltaPoint also includes insurance billing capabilities, allowing practices to manage primary, secondary, and tertiary insurance claims.

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Rerun logo

Recurring billing. Simplified.

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Rerun is for any small business, organization or association that wants to automate their recurring, subscription or membership billing.

Rerun integrates with AccountEdge, QuickBooks and Xero to help your business run efficiently.

Get started for FREE.
Pay only for what you process.
2.9% + $0.30 per transaction.

Free 30-day trial.
No credit card required.

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Sage 50cloud Pastel logo

Effortless accounting for growing businesses.

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Sage 50cloud Pastel Partner is a powerful desktop accounting solution connected to the cloud, offering in-depth stock and reporting features. It provides smart cloud-connected accounting software with productivity-boosting features like direct bank feeds, cloud document storage, and integrated payments. Sage 50cloud Pastel Partner helps growing businesses run their operations more efficiently with its time-saving solutions for managing accounting, invoicing, cash flow, inventory, and VAT.

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Flexi Software logo

Accounting Solutions That Power Business

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Flexi combines the strength of an accounting platform with flexibility and support to meet unique business needs. The suite of accounting and workflow automation solutions have helped enable brands to simplify and automate accounting for over 30 years.

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R4 Enterprise logo

Enterprise resource planning (ERP) solution

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R4 Enterprise is an enterprise resource planning (ERP) solution that helps businesses streamline operations related to inventory management, manufacturing execution, financial planning, and more on a centralized platform. It enables staff members to utilize the built-in CRM tool to track sales processes and access customer information to optimize overall businesses operations.

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bexio logo

Swiss back-office management tool for SMBs and accountants

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bexio is a back-office app for SMBs in Switzerland. It enables self-employed workers, small business owners, and start-ups to manage administrative tasks remotely with online banking, reconciliation, and payroll tools. It can create quotes, orders, QR invoices, and connect with accountants.

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