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Top Rated Bookkeeper Software with Payroll management

Last updated: May 2026

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55 software options

Sage 50 Accounting logo

Sage 50 Accounting

Cloud-based accounting tool for small and midsized business

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Sage 50 Accounting is an online accounting solution for SMBs with Office 365 integration that helps manage accounting, invoicing, cash flow, inventory, taxes, and more.

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Accounting Seed logo

Accounting Seed

Accounting and analytics software built on Salesforce

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Accounting Seed is an accounting application built natively on Salesforce. Its customizable, enabling users to manage their accounting their way. As a full accounting solution, Accounting Seed tracks financial data through the entire business lifecycle.

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Bright logo

Brilliant people use Bright software

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Bright offers a suite of industry-leading software solutions for accountants, bookkeepers and SMEs across the UK and Ireland.

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TaxDome logo

Tax practice management software for bookkeepers and CPAs

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TaxDome is a leading practice management platform for tax, bookkeeping and accounting firms, as well as CPAs and EAs. TaxDome allows firms of all sizes to streamline and maintain oversight of their practice by using one platform for both internal practice management and client-facing tools.

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SaasAnt Transactions logo

Accounting and data entry software

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SaasAnt Transactions is an accounting and data entry software that helps businesses bulk import, export, and delete transactions in Quickbooks Desktop from within a unified platform. It allows staff members to maintain an audit history of all imported and deleted transactions.

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Firm360 logo

Built for accountants by accountants to simplify your firm.

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Firm360 is the all-in-one platform built for accountants by accountants to simplify the work behind the workflow. From project management to client communication and billing, we help accounting firms operate with clarity, supported by expert training and responsive support.

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Reckon One logo

All small and medium-sized businesses.

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Easy to use online accounting software for small businesses. Plans start at just $24 per month.

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QuickBooks Enterprise logo

Enterprise accounting, FSM and inventory management solution

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QuickBooks Desktop Enterprise is an accounting software for small businesses which provides users with real-time access to customer, employee, and vendor information. The software includes tools for managing inventory, shipping, sales orders, pricing, tasks, invoicing, reporting, and more.

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Business Importer logo

Import accounting transactions into QuickBooks/Sage/Xero

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Business Importer helps businesses manage processes related to transactions import, export, information update & more across various accounting applications. The platform lets users create custom fields to handle credit memos, purchase and sales orders, receipts, and invoices.

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Online Check Writer logo

Software for managing payments and accounting operations

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OnlineCheckWriter.com is check printing software and a B2B payment platform with 30+ business payment tools. Pay and get paid with checks, eChecks, ACH, wires, international payments, and credit cards. Connects with QuickBooks, Xero, and more.

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Telleroo logo

Supplier and payroll payments made easy with Telleroo

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Telleroo is a supplier payments and payroll solution that helps businesses save time and de-risk payments. Users can create, fund and process pay runs in minutes rather than hours, saving them time and hassle.

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ZipBooks logo

Accounting and online invoicing software

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ZipBooks is a cloud-based accounting software that caters to the bookkeeping and accounting needs of small to medium-sized businesses and bookkeeping firms. The solution offers core accounting, financial reporting, online invoicing, expense tracking, credit card processing, and more.

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Smartly logo

Cloud-based payroll software with a self-service portal

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Smartly is cloud-based payroll software that helps businesses pay employees on time in accordance with legislation. It includes a self-service portal that allows employees to access their payroll details, approvals, payslips, timesheets, and more.

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Open logo

Banking and financial operations management platform

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Open is a cloud-based software designed to help startups and small to midsize enterprises manage payments, virtual accounts, cash, invoices, taxes, expenses, and more via a unified portal. The platform includes payroll management functionality, which enables businesses to track employees’ attendance and leaves, create payslips, and analyze reports for reference.

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Buku logo

Business runs on it !!

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Buku is a powerful ERP solution designed for small businesses. Simplify invoicing, billing, and inventory management with an intuitive, all-in-one platform. Automate tasks, gain real-time financial insights, and manage your business efficiently from anywhere with Buku’s cloud-based accessibility.

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Indy logo

All in one application for freelancers !

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Online application that helps self-employed automate accounting, from expense tracking to tax filling and bank reconciliation.

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Capium logo

Accounting platform for payroll specialists & bookkeepers

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Capium is a tax-compliant cloud-based accounting solution with data entry and corporate tax filing capabilities for filing UK taxes. It is a fully integrated suite of core accounting services, including bookkeeping, payroll, accounts production, corporation tax, self-assessment, practice management, anti-money laundering, and more.

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QNE Accounting Software logo

Accounting System in Southeast Asia.

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Accounting Software (known as QNE AI Cloud Accounting) designed specifically to meet the requirements of local business practices and challenging environments in Southeast Asia

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Cheqbook logo

Smart Online Accounting

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Cheqbook is fast and easy to pick up for business owners while having the pro features that accountants and bookkeepers need. We can save business owners two weeks a year through our patent pending import and smart categorization.

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Clay logo

Financial and accounting automation platform

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Clay is a financial and accounting software platform that helps businesses automate bank reconciliations, generate financial reports, and centralize business information. The platform features automatic bank reconciliation, cash flow projections up to twelve months, client and vendor management, and automated accounting entries. It includes integrations with multiple banks, tax authorities, and ERP systems, along with an AI assistant for user support.

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PBS Accounting logo

Ge more done with Passport Business Solutions

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Passport Business Solutions (PBS) Accounting software is designed for growing small to mid-sized US companies ranging from 6 to 100 million in annual sales. Fully integrated professional level accounting software that fits a wide range of businesses. On-premise.

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Quipu logo

The invoicing and treasury software for freelancers and SMEs

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Quipu is the all-in-one solution that allows you to control invoicing, treasury, taxes and customers in a simple and intuitive way.

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Crunched logo

Accounting & bookkeeping for small businesses

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Crunched is an accounting software helping businesses gain valuable insight into income and expense trends with bookkeeping, invoices and payment collection

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IPaidThat logo

Cloud-based accounting tool to manage business finances.

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iPaidThat is a complete solution for managing accounting and finance for your business. It offers automated invoice collection and processing, bank reconciliation, expense reporting, supplier payments, e-invoicing, cash flow forecasts, and more to simplify financial management.

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Oneir logo

Enterprise resource planning and financial management tool

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Oneir Solutions is ERP software for retail, manufacturing, and wholesale businesses. Manage sales orders, POS, inventory, financials, contract billing, and customer relationships in one platform while gaining visibility into operations and performance.

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