getapp-logo

App comparison

Add up to 4 apps below to see how they compare. You can also use the "Compare" buttons while browsing.

GetApp offers objective, independent research and verified user reviews. We may earn a referral fee when you visit a vendor through our links. 

Top Rated Payroll Software with Shopify

Last updated: May 2026

Verified reviewer profile picture
Get free expert advice+1 (888) 216-6745
Call now for a one-to-one consultation in under 15 mins.
1 filter applied

Features


Integrated with


Pricing model


Devices supported


Organization types


User rating


11 software options

Rippling logo

Workforce management across HR, finance, and IT. 

learn more
Rippling runs payroll in minutes with a 100% error-free guarantee, compliance automation, and configurability. No manual work needed.

Read more about Rippling

Users also considered
Gusto logo

Gusto is the all-in-one HR platform for growing businesses.

learn more
With Gusto, you get modern HR features like effortless payroll, benefits, hiring, management resources—and more. Gusto is proud to serve more than 500,000 businesses in the US with a single trusted system, competitive compensation tools, and expert guidance to help you empower your team.

Read more about Gusto

Users also considered
Reckon Payroll logo

Online payroll software for SMBs to analyze finances

learn more
Reckon Payroll is an online accounting tool that offers financing modules and allows self-employed and small business owners to manage wages, leave, super and Single Touch Payroll for an unlimited number of employees.

Read more about Reckon Payroll

Users also considered
Facturama logo

Your easiest way to issue SAT-compliant invoices.

learn more
Generate CFDI 4.0 payroll receipts quickly and securely. Facturama lets you manage employee data and issue SAT-valid payroll documents with full compliance and automation.

Read more about Facturama

Users also considered
Acumatica Cloud ERP logo

Cloud-based enterprise resource planning software

learn more
Acumatica Cloud ERP simplifies payroll with Payroll Management, Tax Compliance, and W-2 Preparation. It offers an Employee Database, Self-Service Portal, and Direct Deposit for efficiency. Benefits Management and Vacation Tracking enhance HR, while reports provide key insights.

Read more about Acumatica Cloud ERP

Users also considered
FreshBooks logo

Invoice and accounting software tailored to small businesses

learn more
FreshBooks is accounting software that helps small business perform accounting tasks, conduct invoicing, manage expenses, and more.

Read more about FreshBooks

Users also considered
QuickBooks Payroll logo

Small business payroll platform

learn more
QuickBooks Payroll is a cloud-based payroll solution for small businesses which offers automatic payroll tax calculations, integrated time tracking, same day direct deposit, real-time data updates, tax form preparation and filing, and an online employee portal to streamline the payroll process

Read more about QuickBooks Payroll

Users also considered
Xero logo

Cloud-based accounting software for small businesses

learn more
Xero's payroll tool enables you to track employee payroll information, generate payslips and reports, automatically update the general ledger, and more.

Read more about Xero

Users also considered
QuickBooks Online logo

Accounting and business management software

learn more
QuickBooks Online is a complete payroll solution which allows users to manage all their financial data in one platform, with real-time dashboards and reports.

Read more about QuickBooks Online

Users also considered
NetSuite logo

AI-powered cloud-based business management suite

learn more
NetSuite is an AI-powered cloud-based business management suite. It helps organizations streamline their operations and gain real-time insights into their performance. The suite caters to a range of industries such as manufacturing, retail, and professional services.

Read more about NetSuite

Users also considered
MYOB Business logo

Online accounting & payroll for every business

learn more
Cloud based accounting software to automate all your payroll requirements, plus client management, tax and all your accounting needs.

Read more about MYOB Business

Users also considered