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Top Rated Supply Chain Management Software with Shopify

Last updated: May 2026

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98 software options

NetSuite logo

NetSuite

AI-powered cloud-based business management suite

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Take control of your supply chain with real-time visibility of items from supplier through production to the end customer. NetSuite procurement functionality allows users to manage vendor relationships and automate purchases.

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FreightPOP logo

FreightPOP

Intelligence that powers your supply chain

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FreightPOP is an AI supply chain software platform unifying OMS, WMS, and TMS to deliver end-to-end visibility from procurement to delivery. Automate workflows, optimize transportation, manage warehouse execution, and gain real-time analytics in one connected system.

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INTUENDI logo

INTUENDI

AI-powered demand planning for smarter faster supply chains

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Intuendi is the AI-powered demand planning platform for high-growth companies and scale-ups with complex supply chains. It helps you reduce stockouts, slash excess, automate POs, and make smarter, faster decisions. Intuendi helps you scale without chaos. We're your next competitive advantage.

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MyCarrierTMS logo

MyCarrierTMS

Streamline your Shipping. Transform your Business.

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Streamline every step of your LTL shipping—from order to payment—for accuracy, visibility, and control.

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3PL Warehouse Manager logo

3PL Warehouse Manager

Cloud-based warehouse management system

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Extensiv 3PL Warehouse Manager accurately manages billions of dollars in inventory and processes more than 1 million orders a week making us the proven backbone for 3PL warehouses

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SKULabs logo

SKULabs

Cloud-based inventory management and order fulfillment

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SKULabs' supply chain management system provides end-to-end control over inventory, orders, and fulfillment. Easily manage stock across warehouses, streamline procurement, and optimize shipping with real-time tracking and automation.

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ReverseLogix logo

ReverseLogix

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Smarter returns. Better business.

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ReverseLogix is the only end-to-end, purpose-built, returns management system (RMS) with configurable and flexible workflows that serve B2B, B2C and hybrid environments. We don’t just solve the returns logistics puzzle, we optimize it.

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Shipedge logo

Shipedge

Web-based warehouse, order management and fulfillment system

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Cloud-based Warehouse Management System with an omnichannel Order Management System all-in-one solution for etailers and 3PLs.

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Item logo

Item

Maximizing E-commerce, Simplifying Operations.

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Item: Revolutionize your e-commerce logistics with a single software solution. Combining RMS, OMS, WMS, YMS, Bookkeeping, and Data Intelligence, Item streamlines your entire logistics process, ensuring seamless operation and data security. Experience innovation in logistics management with Item.

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GOIS logo

GOIS

Inventory & Order Management System w/QuickBooks Integration

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GOIS is a cloud-based inventory and order management system that runs on Web & Mobile and integrates with QuickBooks Online & Desktop.

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ZhenHub logo

ZhenHub

Warehouse, inventory, and shipping management

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ZhenHub is a logistics management system for eCommerce retailers which is designed to help manage warehouse operations, inventory, orders, and shipping. The cloud-based tool allows users to automate their logistics workflows and manage inventory and orders from one single dashboard.

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ShipWise logo

High-volume shipping software

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ShipWise stands as a top-tier provider, offering cloud-based, on-premise, and shipping API solutions tailored for e-commerce and 3PL industries. Harness the power of rate-shop across diverse carriers, automate custom business rules, and integrate with multiple e-commerce platforms.

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Refund Retriever logo

Free, fast, and automatic FedEx & UPS shipping refunds

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Refund Retriever audits your FedEx or UPS account for late deliveries (GSR) and billing mistakes. Small parcel audit reduces shipping costs by 2-6% per year. We can even help with your parcel contract negotiations and carrier data viability. Amazon FBA reimbursements also available.

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Finale Inventory logo

Cloud-based inventory management solution

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From table-stakes (real-time inventory management syncs) to bells and whistles (mobile barcoding, forecasting, custom dashboards), Finale's cloud-based inventory system integrates seamlessly with your sales channels to prevent overselling & keep you ahead of the game.

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Craftybase logo

Smarter inventory for growing makers and product brands.

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Get full visibility over your supply chain. Craftybase tracks suppliers, material usage, purchase orders, and inventory movement, making it easy for small brands to stay organized and efficient.

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Kechie logo

All-in-one cloud-based ERP & Inventory Management for SMBs

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Kechie’s Supply Chain Management enables users to forecast, track, and
determine the best route of options for the supply cycle.

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Magestore logo

The world's #1 Magento-native POS.

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Magestore is the world's #1 Magento-native POS. Magestore POS ensures real-time & online-offline integration for Magento merchants. With Magestore POS, you can leverage Magento’s powerful capabilities to drive more sales in offline stores and grow your business.

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ShipHawk logo

Automate the world behind the buy button

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Advanced warehouse and fulfillment automation for eCommerce shippers.

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Shippingbo logo

e-commerce logistics software

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Shippingbo is the all-in-one logistics solution that helps companies increase their e-commerce performance. The solution can connect to over 300 sales sources and help ship mass-orders.

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eLogii logo

Route Optimization Software - Distribution or Field Service

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eLogii is the best fit for distribution or field service businesses with more than 10 vehicles and 100+ daily orders / visits.

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Descartes Zangerine logo

All-in-One Software for Distribution, Wholesale & eCommmerce

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Zangerine is a cloud-based inventory management solution which enables users to manage purchasing, receiving, orders, shipping, inventory, ecommerce, and more

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Cleo Integration Cloud logo

AI-powered supply chain integration platform

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Cleo Integration Cloud is a supply chain orchestration platform that combines EDI compliance, API integration, and AI-driven automation capabilities. The platform features no-code trading partner onboarding, intelligent error resolution, and synchronization with ERP, TMS, and WMS systems. It includes supplier portals, pre-built integrations for applications like SAP and Oracle, and supports industries including logistics, manufacturing, retail, and healthcare.

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ERPAG logo

ERP for small and mid-sized companies

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ERPAG is a cloud-based ERP system for small and mid-sized companies, which covers sales, purchasing, inventory, production, payroll, business analysis, and more

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Stok.ly logo

ePos, stock control & multi-channel listing solution

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Stok.ly is a cloud-based platform designed to help small to midsize retailers manage operations related to electronic point-of-sale, stock control and multi-channel listings. The platform enables users to update data across all eCommerce and other digital platforms in real time.

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MRPeasy logo

Cloud ERP system for growing manufacturers and distributors

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Manage purchases and raise pre-filled purchase orders with a single click. Vendors, prices, lead times, it’s all there. Manage your supply chain using accurate statistics. Forecast your procurement needs.

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