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Benefits Administration Software Integrated with Paychex Flex (2026)

Last updated: April 2026

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15 software options

BambooHR logo

HR software to manage people, payroll and benefits

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Integrates with Paychex Flex, Vanta, Beebole Project Time Tracking, …

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Integrates with Paychex Flex, APS Payroll, Netchex, …

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Integrates with Paychex Flex, Indeed for Employers, CompuFACT, …

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GoCo logo
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Integrates with Paychex Flex, Confluence, Box, …

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Integrates with Paychex Flex, Xero, Hubstaff, …

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Juno logo

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Integrates with Paychex Flex, Microsoft Azure, Access PeopleHR, …

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WorkforceHub Time & Attendance logo

Time and attendance tracking for on-site and remote teams

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Integrates with Paychex Flex, Wagepoint, Tabology EPOS, …

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Refresh logo

Employee benefits, wellness and engagement platform

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Integrates with Paychex Flex, OnPay, Google Workspace, …

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Maxwell Health logo

Benefits administration platform for employees and HR teams

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Integrates with Paychex Flex, Docusign, ADP Workforce Now, …

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Selerix logo

Benefits Technology with a Human Touch

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Integrates with Paychex Flex, Viventium Software, Oracle PeopleSoft, …

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Ubiquity Retirement logo

Customized Retirement Plans for Your Small Business

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Integrates with Paychex Flex, SurePayroll, TriNet HR Plus, …

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Omnipresent logo

Employment platform

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Integrates with Paychex Flex, HiBob

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Instant Pay logo

The earned wage access benefit

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Integrates with Paychex Flex, Paycor, isolved

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PTO Genius logo

Next-Generation Time Off Tracking and Absence Management

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Integrates with Paychex Flex, PeopleStrategy, BrightHR, …

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