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Top Rated Nonprofit Accounting Software with General Ledger in 2026

Verified reviewer profile picture
Verified reviewer profile picture

All user reviews are verified by in-house moderators and provider data by our software research team.  Learn more

Last updated: February 2026

A general ledger provides comprehensive tracking of income and expenses, facilitates accurate reporting, and ensures proper categorization of financial transactions. It supports reconciliation, simplifies tax preparation, and helps maintain organized records for nonprofit organizations. Our reviewers in nonprofit accounting software rated this feature as highly important.

3 Best Nonprofit Accounting Software with General Ledger

  • QuickBooks Enterprise
  • QuickBooks Online Advanced
  • QuickBooks Online - Highest rated for general ledger

See other top Nonprofit Accounting products with general ledger

How we picked the 3 top rated products

We chose the high-performing solutions on this list based on verified user ratings on our site. Depending on available data, qualifying products either had to be among the most user-reviewed or the most searched-for products in the nonprofit accounting software category. They also needed to have sufficient reviews about general ledger, have a minimum user rating of 3 out of 5 for that feature, and show evidence of U.S. market presence. We then added a distinction for the product with the highest rating for general ledger based on our proprietary ratings and reviews. Sponsorship or client status has no influence on the selection of these products, but it may impact the order in which products appear.

Details for the 3 best products

QuickBooks Enterprise logo

QuickBooks Enterprise

4.5
(20.5K)
visit website

User insights about the general ledger feature

Reviewers appreciate QuickBooks Enterprise's general ledger for its ease of use, real-time updates, and comprehensive tracking of financial transactions. They highlight its integration with other modules like accounts receivable, accounts payable, and inventory management, which streamlines financial management. Users find it simple to navigate, customize, and generate detailed reports. They also value the ability to import entries from external sources and the user-friendly interface that simplifies bookkeeping tasks. However, some users mention difficulties with mobile access and the need for better expense tracking accuracy.
“The General Ledger feature in QuickBooks Desktop Enterprise is great because it allow me to easily keep track of my business expenses and income. The reports it generate are also very helpful in determining how my business is doing.”
BT

Brahim T.

Freelancer

“The general ledger features in QuickBooks Desktop Enterprise can help companies accurately track their financial transactions, view their financial position and improve tax compliance.”
Verified reviewer profile picture

Joseph C.

ceo

Nonprofit Accounting key features coverage

QuickBooks Enterprise offers 4 out of the 4 key features for Nonprofit Accounting software identified by reviewers:

Accounting4.6
Financial Reporting4.6
Income & Balance Sheet4.6
Bank Reconciliation4.5

Pros and cons based on 20,593 verified reviews

61% of users rated QuickBooks Enterprise 5 out of 5 stars, while 2% gave it 1 or 2 stars. To determine these pros and cons insights we analyzed 20,593 reviews and identified the topics where users expressed positive and negative sentiment.

Pros:

Comprehensive expense tracking

Ideal for small businesses

Effective financial management

Streamlined bookkeeping

Efficient tax management

Cons:

Frequent issue resolution challenges

Slow performance speed

Disruptive software updates

High cost concerns

Unreliable customer service

See pros and cons details

Pricing

Starting price:$2210 flat rate/per year|Free version:Not available|Free trial:Available

Prices may vary depending on the number of users and features.

QuickBooks Online Advanced logo
4.4
(1K)

User insights about the general ledger feature

Reviewers indicate that QuickBooks Online Advanced's general ledger is essential for accounting, offering excellent integration with other modules like accounts receivable, accounts payable, and inventory management. They appreciate its straightforward setup, customization options, and the ability to track daily financial activities. Users find it easy to use, even for those without an accounting background, and value the accurate and detailed financial insights it provides. Some reviewers mention the need for more customization options and improvements to match the desktop version's capabilities.
“The set up and customizable General Ledger gives me an accurate picture to identify items that exceed our budgeted forcasts. It also allows me to assess my Chart of Accounts and prevent duplicated accounts (doing the same thing but just phrased differently) and to find misallocated transactions”
MJ

Maribeth J.

Office Manager

“the General Ledger is closely integrated with other modules, such as accounts receivable, accounts payable, and inventory management. I really like it”
EA

Edwin A.

Accountant

Nonprofit Accounting key features coverage

QuickBooks Online Advanced offers 4 out of the 4 key features for Nonprofit Accounting software identified by reviewers:

Accounting4.6
Financial Reporting4.5
Income & Balance Sheet4.6
Bank Reconciliation4.5

Pros and cons based on 1,035 verified reviews

60% of users rated QuickBooks Online Advanced 5 out of 5 stars, while 4% gave it 1 or 2 stars. To determine these pros and cons insights we analyzed 1,035 reviews and identified the topics where users expressed positive and negative sentiment.

Pros:

Convenient remote access

Efficient bookkeeping

Comprehensive tracking features

Robust financial management

Organized multi-entity management

Cons:

Challenging issue resolution

Limited desktop version compatibility

High costs and confusing pricing

Inconsistent customer service

Subpar mobile accessibility

See pros and cons details

Pricing

Starting price:$235 flat rate/per month|Free version:Not available|Free trial:Available

Prices may vary depending on the number of users and features.

QuickBooks Online logo
4.3
(8.3K)

User insights about the general ledger feature

Users find QuickBooks Online's general ledger helpful for tracking income and expenses, with easy data entry and customization options. They appreciate the ability to connect directly to bank accounts, simplifying transaction management. Reviewers mention the intuitive interface and the variety of report options available. However, some users note that editing entries can be challenging and the lack of clear debit and credit column headings can be confusing. Overall, the general ledger is seen as a vital tool for maintaining accurate financial records and generating financial reports.
“QuickBooks Online's general ledger feature is a central repository of all financial transactions. Users can view and manage all financial transactions in one place, including income, expenses, assets, liabilities, and equity. ”
MG

Massimiliano G.

Graphic Designer

“The general ledger is very intuitive, and includes all of the receivables and payables information in one place from which I can easily navigate to any other section including banking, invoicing, etc.”
ED

Eugene D.

Project Manager

Nonprofit Accounting key features coverage

QuickBooks Online offers 4 out of the 4 key features for Nonprofit Accounting software identified by reviewers:

Accounting4.5
Financial Reporting4.4
Income & Balance Sheet4.5
Bank Reconciliation4.4

Pros and cons based on 8,328 verified reviews

57% of users rated QuickBooks Online 5 out of 5 stars, while 5% gave it 1 or 2 stars. To determine these pros and cons insights we analyzed 8,328 reviews and identified the topics where users expressed positive and negative sentiment.

Pros:

Cloud-based accessibility

Ideal for small businesses

Seamless integrations

Comprehensive accounting features

Efficient tax management

Cons:

Frequent bugs and crashes

Limited desktop features

Recurring costs and price increases

Inadequate customer support

Complicated transaction management

See pros and cons details

Pricing

Starting price:$38 flat rate/per month|Free version:Not available|Free trial:Available

Prices may vary depending on the number of users and features.

Other Top Rated Nonprofit Accounting Software with General Ledger in 2026

Blackbaud Financial Edge NXT logo

Blackbaud Financial Edge NXT

Cloud fund accounting software for social good organizations

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Financial Edge NXT delivers comprehensive fund accounting tools that allow organizations to streamline financial processes and demonstrate accountability

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Endowment Manager

(0)

Replace your endowment accounting spreadsheets

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Simplify endowment management while maintaining or advancing your organizations unique policies & procedures

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Fund EZ logo

Fund EZ

Accounting Software Built for Your Nonprofit

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Empower your nonprofit with Fund EZ! Effortlessly create and track budgets for diverse funds, programs, projects, grants, funding sources, and departments. Achieve financial excellence with Fund EZ's all-in-one solution!

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Aplos logo

Aplos

Category Leaders

Aplos: where every dollar finds its purpose

visit website
Aplos provides the robust accounting framework necessary to track restricted vs unrestricted funds and generate comprehensive, auditor-friendly reports. Our features are crafted to aid budgeting, automate complex allocations, and provide real-time insights into your financial health.

Read more about Aplos

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Sage Intacct logo

Sage Intacct

Category Leaders

Best-in-class Cloud ERP for Finance

visit website
The #1 Nonprofit Cloud Accounting and Financial Management System Powering Mission-Driven Nonprofits. The AICPA’s preferred provider.

Read more about Sage Intacct

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MIP Accounting logo

MIP Accounting

Fund accounting for government organizations and nonprofits

visit website
MIP Fund Accounting is a comprehensive, configurable fund accounting solution designed to meet and handle the complex financial management and fund accounting needs of nonprofit and government organizations.

Read more about MIP Accounting

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QuickBooks Enterprise logo
Category Leaders

Enterprise accounting, FSM and inventory management solution

QuickBooks Desktop Enterprise is an accounting software for small businesses which provides users with real-time access to customer, employee, and vendor information. The software includes tools for managing inventory, shipping, sales orders, pricing, tasks, invoicing, reporting, and more.

Read more about QuickBooks Enterprise

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QuickBooks Online logo
Category Leaders

Accounting and business management software

QuickBooks Online is an all-in-one online business software designed to help manage business finances. The platform is built to scale businesses, unlocking insights and providing the functionality of a larger team, all on one integrated platform.

Read more about QuickBooks Online

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QuickBooks Online Advanced logo
Category Leaders

Accounting & business management for small businesses

QuickBooks Online Advanced is a web-based accounting & business management solution which enables small businesses to track sales, inventory, financial accounts & payroll from a single dashboard

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NetSuite logo
Category Leaders

AI-powered cloud-based business management suite

NetSuite's ERP provides one integrated, cloud solution to manage your entire organization and accelerate your mission. Gain efficiencies with a powerful nonprofit fiscal management system built to meet the unique needs of your nonprofit.

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Sage Accounting logo

Accounting software for small businesses

Sage Accounting is an accounting system for small business owners. It has features to help users forecast their cashflow, send and track invoices and act on real-time reporting. Users can manage their business from anywhere, at any time, from the cloud and with mobile functionality. Sage Accounting application is available for iOS and Android.

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MoneyMinder logo
Category Leaders

Simple accounting software for volunteers.

Simple nonprofit accounting software for volunteer-based groups (PTAs, PTOs, Booster Clubs, Sports Teams, Scouts, Service Clubs, etc.)

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MonkeyPod logo

Your all-in-one nonprofit management platform

MonkeyPod is an all-in-one platform to manage nonprofit accounting, donor management, grants management, CRM, email marketing, online fundraising, and more. Add unlimited users, CRM entities, email subscribers, online fundraising pages, pipelines, and more at no additional cost.

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Kashoo logo

Online accounting software for small businesses

Kashoo is simple cloud accounting for small business owners who want the control and simplicity of doing their own books. It provides small business owners with the ability to run their business the way they want to, with tools for invoice management, payment processing, reporting, and more.

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Accounting and online invoicing software

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Cloud-based accounting and financial management software

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Denali Fund logo

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Key features for Nonprofit Accounting software

Based on GetApp's analysis of verified user reviews collected between July 2021 and August 2024.

  • Accounting: Users benefit from detailed tracking of income and expenses, customizable reports, and easy integration with CRM and donation platforms. 100% of reviewers rated this feature as important or highly important.
  • Financial Reporting: Reviewers highlight the customization of reports for different audiences, easy sharing with boards, and instant access to financial data. 98% of reviewers rated this feature as important or highly important.
  • Income & Balance Sheet: Users appreciate the clear layout, customization options, and the ability to track financial standings for reporting and transparency. 97% of reviewers rated this feature as important or highly important.
  • Bank Reconciliation: Reviewers find it easy to reconcile accounts with automated bank feeds, clear transaction matching, and efficient reconciliation processes. 95% of reviewers rated this feature as important or highly important.