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Top Rated Accounts Payable Software with Payroll Management in 2026

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Verified reviewer profile picture

All user reviews are verified by in-house moderators and provider data by our software research team.  Learn more

Last updated: April 2026

Payroll management in accounts payable software streamlines payroll processing, ensures timely and accurate payments, automates tax calculations and filings, and maintains comprehensive employee records, reducing administrative workload and improving efficiency. Our reviewers in accounts payable software rated this feature as highly important.

4 Best Accounts Payable Software with Payroll Management

  • FreshBooks - Highest rated for payroll management
  • QuickBooks Online
  • QuickBooks Enterprise
  • QuickBooks Desktop

See other top Accounts Payable products with payroll management

How we picked the 4 top rated products

We chose the high-performing solutions on this list based on verified user ratings on our site. Depending on available data, qualifying products either had to be among the most user-reviewed or the most searched-for products in the accounts payable software category. They also needed to have sufficient reviews about payroll management, have a minimum user rating of 3 out of 5 for that feature, and show evidence of U.S. market presence. We then added a distinction for the product with the highest rating for payroll management based on our proprietary ratings and reviews. Sponsorship or client status has no influence on the selection of these products, but it may impact the order in which products appear.

Details for the 4 best products

FreshBooks logo
4.5
(4.5K)

User insights about the payroll management feature

Reviewers appreciate FreshBooks' payroll management capabilities, noting its ease of use and intuitive layout. They report that FreshBooks integrates well with third-party payroll providers like Gusto and Wagepoint, which helps ensure accurate and timely payments. Users find the bulk upload feature particularly valuable for managing new hires and appreciate the time-saving automation and data security. They indicate that FreshBooks enables accurate payroll calculations by synchronizing employee time entries and expenses, making payroll management smooth and efficient.
“It's important to note that Freshbooks is primarily a cloud accounting software for small business owners, and it does not offer a built-in payroll management feature. Freshbooks allows you to create and send invoices, track expenses, manage accounts receivable and accounts payable, and generate financial reports, among other features. However, if you need a payroll management system, you would need to integrate Freshbooks with a third-party payroll provider. Freshbooks integrates with a variety of popular payroll providers, such as Gusto and Wagepoint, which offer features such as calculating and filing payroll taxes, direct deposit, and employee self-service portals. By integrating Freshbooks with a payroll provider, you can streamline your payroll management process and ensure that your employees are paid accurately and on time.”
IZ

Idris Z.

Content writer

“Payroll management of every consultant and employee on FreshBooks is easy and smooth, you not find any problems.”
RS

Rahul S.

IT Recruiter

Accounts Payable key features coverage

FreshBooks offers 6 out of the 6 key features for Accounts Payable software identified by reviewers:

Accounting4.5
Invoice Processing4.6
General Ledger4.4
Bank Reconciliation4.4
Expense Tracking4.5
Billing & Invoicing4.6

Pros and cons based on 4,506 verified reviews

59% of users rated FreshBooks 5 out of 5 stars, while 2% gave it 1 or 2 stars. To determine these pros and cons insights we analyzed 4,506 reviews and identified the topics where users expressed positive and negative sentiment.

Pros:

Cloud accounting accessibility

Efficient invoicing capabilities

Tailored for small businesses

Minimal learning curve

Effective freelancer tools

Cons:

Reliance on internet connection

Limited bank integration

High costs for larger teams

Frequent technical issues

See pros and cons details

Pricing

Starting price:$21 flat rate/per month|Free version:Not available|Free trial:Available

Prices may vary depending on the number of users and features.

QuickBooks Online logo
4.3
(8.3K)

User insights about the payroll management feature

Reviewers appreciate QuickBooks Online's payroll management for its ease of use and automation capabilities. They highlight the ability to integrate with time tracking software, direct deposit, and automated tax calculations. Users find it helpful for managing employee data, generating comprehensive reports, and ensuring timely payments. They also value the seamless integration with other accounting tasks and the ability to make adjustments easily. However, some mention issues with customer support and additional costs. Overall, they find it a reliable and efficient tool for payroll management.
“If you use Quickbooks Online Payroll, taxes and return filing is automated. Email reminders to submit payroll. If you use QuickBooks Time (formally TSheets), approving timesheets is a breeze and imports into payroll to reduce double entry.”
NS

Nicole S.

owner

“Payroll set up through QBO was critical for us because of the easy integrations with our existing systems. It helps with the automation of systems and allows us to focus on more strategic points of the business. ”
JH

Johnny H.

Head of Ops & FInance

Accounts Payable key features coverage

QuickBooks Online offers 6 out of the 6 key features for Accounts Payable software identified by reviewers:

Accounting4.5
Invoice Processing4.4
General Ledger4.4
Bank Reconciliation4.4
Expense Tracking4.5
Billing & Invoicing4.4

Pros and cons based on 8,385 verified reviews

57% of users rated QuickBooks Online 5 out of 5 stars, while 5% gave it 1 or 2 stars. To determine these pros and cons insights we analyzed 8,385 reviews and identified the topics where users expressed positive and negative sentiment.

Pros:

Cloud-based accessibility

Ideal for small businesses

Seamless integrations

Comprehensive accounting features

Efficient tax management

Cons:

Frequent bugs and crashes

Limited desktop features

Recurring costs and price increases

Inadequate customer support

Complicated transaction management

See pros and cons details

Pricing

Starting price:$38 flat rate/per month|Free version:Not available|Free trial:Available

Prices may vary depending on the number of users and features.

QuickBooks Enterprise logo
4.5
(20.6K)

User insights about the payroll management feature

Reviewers highlight QuickBooks Enterprise's payroll management as easy to use and efficient for managing employee data, calculating and filing payroll taxes, and generating payroll checks. They appreciate the accuracy and control it provides, with features like paychecks, payroll taxes, and comprehensive reporting. Users find it convenient for keeping employee payroll in order and ensuring timely payments. However, some mention the need for improvements and occasional glitches. Overall, they find it simplifies payroll management and integrates well with other financial tasks.
“Comprehensive payroll management feature that helps companies streamline their payroll process. With QuickBooks Payroll, users can easily manage employee data, calculate and file payroll taxes, and create payroll and payroll checks.”
MK

Mehdi K.

Mehdi work

“Quickbooks does it all; generate paychecks, pay payroll taxes, do reports. No guess work.”
YK

Yvonne K.

Admin. Assistant

Accounts Payable key features coverage

QuickBooks Enterprise offers 5 out of the 6 key features for Accounts Payable software identified by reviewers:

Accounting4.6
Invoice Processing
General Ledger4.5
Bank Reconciliation4.5
Expense Tracking4.5
Billing & Invoicing4.6

Pros and cons based on 20,610 verified reviews

61% of users rated QuickBooks Enterprise 5 out of 5 stars, while 2% gave it 1 or 2 stars. To determine these pros and cons insights we analyzed 20,610 reviews and identified the topics where users expressed positive and negative sentiment.

Pros:

Comprehensive expense tracking

Ideal for small businesses

Effective financial management

Streamlined bookkeeping

Efficient tax management

Cons:

Frequent issue resolution challenges

Slow performance speed

Disruptive software updates

High cost concerns

Unreliable customer service

See pros and cons details

Pricing

Starting price:$2210 flat rate/per year|Free version:Not available|Free trial:Available

Prices may vary depending on the number of users and features.

QuickBooks Desktop logo
4.4
(2.5K)

User insights about the payroll management feature

Reviewers indicate that QuickBooks Desktop simplifies payroll management with automated calculations, tax deductions, and paycheck generation. They appreciate the ease of processing payroll, direct deposit features, and the ability to manage employee profiles and track hours. Users find it efficient for filing quarterly and yearly payroll reports and making adjustments as needed. However, some mention issues with support and additional costs. Overall, they find it a valuable tool for managing payroll smoothly and accurately.
“I love the payroll management. You tell QB the individual hours and it processes checks for you. You can either do a check or have it direct deposited into employee accounts. I always use the "Enter Time" for the hours and that part integrates very well with 3rd party vendors for time tracking.”
BS

Beverly S.

Bookkeeper / Secretary

“I like the accuracy and efficiency that comes with this feature. This streamlines the complex process of calculating taxes, salaries and deductions, which saves me time and reduces likelihood of errors.”
SM

Shelmith M.

Admin Virtual Assistant

Accounts Payable key features coverage

QuickBooks Desktop offers 6 out of the 6 key features for Accounts Payable software identified by reviewers:

Accounting5.0
Invoice Processing4.6
General Ledger4.6
Bank Reconciliation4.6
Expense Tracking4.5
Billing & Invoicing4.6

Pros and cons based on 2,547 verified reviews

56% of users rated QuickBooks Desktop 5 out of 5 stars, while 3% gave it 1 or 2 stars. To determine these pros and cons insights we analyzed 2,547 reviews and identified the topics where users expressed positive and negative sentiment.

Pros:

Comprehensive expense tracking

Ideal for small businesses

Efficient bookkeeping

Accessible learning resources

Robust accounting software

Cons:

Frequent and costly upgrades

Inefficient phone support

Challenging file management

Inadequate support

High costs and fees

See pros and cons details

Pricing

Starting price:$1922 flat rate/per year|Free version:Not available|Free trial:Available

Prices may vary depending on the number of users and features.

Other Top Rated Accounts Payable Software with Payroll Management in 2026

QuickBooks Enterprise logo
Category Leaders

Enterprise accounting, FSM and inventory management solution

QuickBooks Desktop Enterprise is an accounting software for small businesses which provides users with real-time access to customer, employee, and vendor information. The software includes tools for managing inventory, shipping, sales orders, pricing, tasks, invoicing, reporting, and more.

Read more about QuickBooks Enterprise

Users also considered
Rippling logo

Workforce management across HR, finance, and IT. 

Rippling Spend: Consolidate your business’s corp cards, bill pay, travel and expense management, into one modern system with built-in approvals, custom policies, and automatic reconciliation.

Read more about Rippling

Users also considered
QuickBooks Online logo

Accounting and business management software

QuickBooks Online automatically updates the Accounts Payable accounts in your chart of accounts as soon as you enter a new bill or pay outstanding bills.

Read more about QuickBooks Online

Users also considered
FreshBooks logo
Category Leaders

Invoice and accounting software tailored to small businesses

FreshBooks is accounting software that helps small business perform accounting tasks, conduct invoicing, manage expenses, and more.

Read more about FreshBooks

Users also considered
Dynamics 365 logo

ERP and CRM applications from Microsoft

Microsoft Dynamics 365 is a multi-language, multi-currency enterprise resource planning (ERP) software. The solution is designed for midsize and larger companies, and is fully customizable and extensible through its rich development platform and tools.

Read more about Dynamics 365

Users also considered
Xero logo
Category Leaders

Cloud-based accounting software for small businesses

Reduce admin, pay your bills on time and get an overview of where your business is spending money with accounts payable software. Use Xero to pay bills from suppliers by scheduling payments, receiving invoices and prioritizing bills.

Read more about Xero

Users also considered
QuickBooks Desktop logo

Comprehensive business management solution

QuickBooks Desktop provides a comprehensive business management solution that integrates accounting, payroll, inventory, and multiple company management functionalities. The software offers industry-specific editions tailored for manufacturing, wholesale, contractors, and accountants, with features like advanced reporting, job costing, and automated pricing rules. Users can enhance their experience with cloud hosting capabilities that enable remote access and team collaboration.

Read more about QuickBooks Desktop

Users also considered
NetSuite logo

AI-powered cloud-based business management suite

Streamline the process using AI to review, approve & pay invoices with NetSuite’s cloud accounting software. Processes such as transaction matching, journal entries, approvals and reconciliations are automated eliminating manual data entry, and time and effort required to process bills is minimized.

Read more about NetSuite

Users also considered
QuickBooks Online Advanced logo

Accounting & business management for small businesses

QuickBooks Online Advanced streamlines accounts payable with automated bill entry, approval workflows, and detailed reporting.

Read more about QuickBooks Online Advanced

Users also considered
Odoo logo

All-in-one open-source business software

Odoo Accounting helps you to manage your daily accounting easily and have a global view of the state of your business. Features include: bank synchronization, automatic invoices, recurring billing management, reconciliations, and more.

Read more about Odoo

Users also considered
Patriot Accounting logo
Category Leaders

Cloud-based accounting and payroll software

Accounting Basic $20/mo - flat rate, unlimited use
Accounting Premium $30/mo - flat rate, unlimited use
Pay unlimited bills to vendors and 1099 contractors. At the end of the year, you can e-file the 1099 and 1096 and print 1099s for your contractors.

Read more about Patriot Accounting

Users also considered
Sage Intacct logo

Best-in-class Cloud ERP for Finance

Sage Intacct's AP software lets you create automated, configurable processes to enhance internal controls and ensure accountability.

Read more about Sage Intacct

Users also considered
Pipefy logo

Cloud-based and AI-powered process orchestration platform

Pipefy is a business process orchestration and automation platform that enables teams to digitize workflows using AI agents and no-code tools. The platform features customizable workflow builders, pre-built AI agents for various departments, and integration capabilities with enterprise messaging systems like WhatsApp, Teams, and Slack. It includes process management tools, custom forms and portals, analytics dashboards, and enterprise-grade security with regulatory compliance features.

Read more about Pipefy

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Online Check Writer logo

Software for managing payments and accounting operations

OnlineCheckWriter.com is check printing software and a B2B payment platform with 30+ business payment tools. Pay and get paid with checks, eChecks, ACH, wires, international payments, and credit cards. Connects with QuickBooks, Xero, and more.

Read more about Online Check Writer

Users also considered
Sage Accounting logo

Accounting software for small businesses

Sage Accounting is an accounting system for small business owners. It has features to help users forecast their cashflow, send and track invoices and act on real-time reporting. Users can manage their business from anywhere, at any time, from the cloud and with mobile functionality. Sage Accounting application is available for iOS and Android.

Read more about Sage Accounting

Users also considered
Factorial logo

AI-powered business software that helps you manage your team

Factorial is the AI-powered business software that takes care of the time-consuming stuff, like hiring, holidays and payroll.

Read more about Factorial

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AvidXchange logo

Automated AP for mid-market businesses

AvidXchange transforms how growing organizations pay bills through industry-leading automated accounts payable software. Offering services and technology that helps you streamline your AP workflows and easily pay suppliers while removing manual tasks and paper from current processes.

Read more about AvidXchange

Users also considered
TallyPrime logo
Category Leaders

Solution for managing accounting and financial operations

TallyPrime is an on-premise business management solution that helps small to midsize businesses manage accounting, inventory, compliance, sales, purchase, manufacturing, job costing, payroll, branch management and more.

Read more about TallyPrime

Users also considered
FreeAgent logo

FreeAgent has been voted the UK's #1 accounting software.

New customer offer: 50% off for the first 6 months. Upload photos of your receipts with the app, set up automatic recurring payments.

Read more about FreeAgent

Users also considered
Sage 100 logo

Enterprise resource planning software

Sage 100 is a customizable business management solution that helps businesses automate financials, operations, and payroll, providing complete visibility into the operations. Sage 100 grows with the business, allowing teams to scale and meet specific needs as a small or medium-sized enterprise.

Read more about Sage 100

Users also considered
Reckon One logo

All small and medium-sized businesses.

Easy to use online accounting software for small businesses. Plans start at just $24 per month.

Read more about Reckon One

Users also considered
Sage 50 Accounting logo

Cloud-based accounting tool for small and midsized business

Sage 50 Accounting is an online accounting solution for SMBs with Office 365 integration that helps manage accounting, invoicing, cash flow, inventory, taxes, and more.

Read more about Sage 50 Accounting

Users also considered
Accounting Seed logo

Accounting and analytics software built on Salesforce

Manage your credit cards, accounts payable, and purchasing with the click of a button. Accounting Seed customers have shortened their accounts payable process by up to 70%. Visit: https://www.accountingseed.com/the-product/paying-vendors

Read more about Accounting Seed

Users also considered
JD Edwards EnterpriseOne logo

Database of resource planning software for enterprises

Oracle's JD Edwards EnterpriseOne is an integrated applications suite of comprehensive enterprise resource planning software that combines business value, standards-based technology, and deep industry experience into a business solution with a low total cost of ownership. EnterpriseOne is the first ERP solution to run all applications on Apple iPad. JD Edwards EnterpriseOne also delivers mobile applications.

Read more about JD Edwards EnterpriseOne

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WinTeam logo

ERP software for janitorial and security contractors

WinTeam is a cloud-based enterprise resource planning (ERP) software designed to help janitorial and security service contractors manage their workforce and automate financial operations. Features include performance tracking, job costing, timekeeping, benefits planning, analytics and reporting.

Read more about WinTeam

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Key features for Accounts Payable software

Based on GetApp's analysis of verified user reviews collected between July 2021 and August 2024.

  • Accounting: Reviewers value the automation, detailed tracking, and customization options for financial management, making it easier to manage accounts, generate reports, and ensure accuracy. 97% of reviewers rated this feature as important or highly important.
  • Invoice Processing: Users highlight time-saving automation, OCR capabilities, and integration with accounting systems, simplifying data entry and streamlining approval workflows. 94% of reviewers rated this feature as important or highly important.
  • General Ledger: Reviewers appreciate the comprehensive tracking of all transactions, customizable reports, and the ability to automate and manage financial entries efficiently. 94% of reviewers rated this feature as important or highly important.
  • Bank Reconciliation: Users find bank reconciliation streamlined by automated bank feeds, ensuring accurate financial records and easy detection of discrepancies. 93% of reviewers rated this feature as important or highly important.
  • Expense Tracking: Reviewers emphasize the organized tracking of expenses, easy categorization, and detailed reporting, helping businesses manage and control their financial outflow effectively. 92% of reviewers rated this feature as important or highly important.
  • Billing & Invoicing: Users value the ease of creating, customizing, and sending invoices, automated reminders, and integration with payment systems, ensuring timely payments and accurate billing. 92% of reviewers rated this feature as important or highly important.