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Nonprofit Accounting Software with Electronic Payments (2026)

Last updated: April 2026

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Key features of Nonprofit Accounting Software

Based on GetApp's analysis of verified user reviews collected between July 2021 and August 2024.

  • Accounting: Users value detailed record-keeping, customizable reports, and easy tracking of restricted funds. Integration with CRM and donation platforms streamlines finances. 100% of reviewers rated this feature as important or highly important.
  • General Ledger: Reviewers appreciate the clear tracking of income and expenses, ease of customization, and the ability to produce accurate, detailed reports. 99% of reviewers rated this feature as important or highly important.
  • Financial Reporting: Users highlight the ease of customizing reports, real-time accuracy, and the ability to export and share comprehensive financial data with stakeholders. 98% of reviewers rated this feature as important or highly important.
  • Income & Balance Sheet: Reviewers note the importance of transparent financial tracking, clean layout, and customizable reports that facilitate easy oversight and comparison. 96% of reviewers rated this feature as important or highly important.
  • Bank Reconciliation: Users find bank reconciliation straightforward and efficient, with automated transaction matching and clear visibility of cleared and outstanding items. 93% of reviewers rated this feature as important or highly important.
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28 software options

QuickBooks Online logo
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Sage Intacct is the AICPA-preferred cloud accounting solution for nonprofits. Automate fund accounting, grant tracking, and ASC 958 reporting. Gain real-time insights with a multi-dimensional GL, AI-powered workflows, and integrations for donor CRMs—purpose-built for mission-driven organizations.

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Sage Accounting is an accounting system for small business owners. It has features to help users forecast their cashflow, send and track invoices and act on real-time reporting. Users can manage their business from anywhere, at any time, from the cloud and with mobile functionality. Sage Accounting application is available for iOS and Android.

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MoneyMinder logo
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Simple accounting software for volunteers.

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Simple nonprofit accounting software for volunteer-based groups (PTAs, PTOs, Booster Clubs, Sports Teams, Scouts, Service Clubs, etc.)

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Aplos logo
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Aplos provides the robust accounting framework necessary to track restricted vs unrestricted funds and generate comprehensive, auditor-friendly reports. Our features are crafted to aid budgeting, automate complex allocations, and provide real-time insights into your financial health.

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MonkeyPod logo

Your all-in-one nonprofit management platform

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MonkeyPod is an all-in-one platform to manage nonprofit accounting, donor management, grants management, CRM, email marketing, online fundraising, and more. Add unlimited users, CRM entities, email subscribers, online fundraising pages, pipelines, and more at no additional cost.

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Kashoo logo

Online accounting software for small businesses

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Kashoo is simple cloud accounting for small business owners who want the control and simplicity of doing their own books. It provides small business owners with the ability to run their business the way they want to, with tools for invoice management, payment processing, reporting, and more.

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AccountsIQ logo

Cloud-based accounting software for medium-sized businesses

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AccountsIQ is cloud-based accounting software that assists businesses in construction, retail, hospitality, and other sectors with cash flow forecasting, budgeting, and financial reporting.

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Denali Fund logo

Nonprofit accounting software

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Denali FUND by Cougar Mountain Software is a cloud-based and on-premise accounting software designed specifically to help nonprofit organizations streamline & manage all accounting processes, including accounts payable & receivable, general ledger, bank reconciliation, payroll, and more

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MIP Accounting logo

Fund accounting for government organizations and nonprofits

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MIP Fund Accounting is a comprehensive, configurable fund accounting solution designed to meet and handle the complex financial management and fund accounting needs of nonprofit and government organizations.

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Springly logo

All-in-one nonprofit software for day-to-day management

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Springly, a brand of AssoConnect, is an all-in-one nonprofit management software. It helps organizations save time on daily management with features for fundraising, accounting, website building, emailing, and more. Rated 4.7/5 stars on Google, Springly has over 30,000 happy customers.

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AccuFund Accounting Suite logo

Online and Onsite Accounting Software for Nonprofits & Govt

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AccuFund’s complete nonprofit financial management system improves all critical aspects of your nonprofit, from budget development to grants management to payroll and HR and accounts payable, selecting the modules that your nonprofit needs now and add others in the future as needs evolve.

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Fund EZ logo

Accounting Software Built for Your Nonprofit

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Empower your nonprofit with Fund EZ! Effortlessly create and track budgets for diverse funds, programs, projects, grants, funding sources, and departments. Achieve financial excellence with Fund EZ's all-in-one solution!

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Xledger logo

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Xledger is a true-cloud financial software that serves over 18,000 customers worldwide. For over 20 years, Xledger has been a leader in automated accounting software and has been empowering ambitious companies around the globe.

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SylogistMission ERP logo

Fund accounting solution for non-profit organizations.

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Serenic Navigator for NPO is a cloud-based and on-premise fund accounting solution which helps non-profits manage resources, programs, and finances on a unified platform. It allows users to have complete visibility into the budgets and expenditures required to manage funding sources and programs. The software delivers several functions including donor management, payroll processing, human resources, budget tracking, grant management, encumbrance, and more.

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Adfinity logo

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Adfinity is one of the most complete accounting software packages, offering a large variety of advanced financial management features. Adfinity brings added value in reporting, automation, digitalization of workflows and paperless working.

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Sparkrock logo

Finance & Human Resources Software Suite.

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Sparkrock 365 is a cloud-based enterprise resource planning (ERP) software that’s designed specifically for the needs of Not-for-Profit organizations. Sparkrock 365 integrates finance, workforce management, payroll and employee scheduling.

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Billit logo

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Billit is an e-platform that provides businesses with financial management tools. Key features include invoicing, making payments, and cost tracking. Documents can be digitized, and the platform supports integration with other solutions, such as customer relationship management software.

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omniBooks logo

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Tangicloud logo

Nonprofit accounting software

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Tangicloud is a nonprofit accounting software that helps businesses manage accounts, invoices, and expenses. The platform enables managers to monitor and manage the financial health of businesses by providing real-time insights into account balances and transactions, as well as reporting tools.

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TrulySmall Accounting logo

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A time-saving accounting solution that automates bookkeeping tasks for small business owners.

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Scopevisio logo

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Scopevisio is the cloud-based business software that automates commercial processes, aligns your company more profitably and thus makes it fit for the digital future.

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