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Top Rated Nonprofit Accounting Software with Electronic payments

Last updated: October 2026

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46 software options

Sage Intacct logo

Best-in-class Cloud ERP for Finance

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Sage Intacct is the AICPA-preferred cloud accounting solution for nonprofits. Automate fund accounting, grant tracking, and ASC 958 reporting. Gain real-time insights with a multi-dimensional GL, AI-powered workflows, and integrations for donor CRMs—purpose-built for mission-driven organizations.

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MIP Accounting logo

Fund accounting for government organizations and nonprofits

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MIP Fund Accounting is a comprehensive, configurable fund accounting solution designed to meet and handle the complex financial management and fund accounting needs of nonprofit and government organizations.

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Fund EZ logo

Accounting Software Built for Your Nonprofit

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Empower your nonprofit with Fund EZ! Effortlessly create and track budgets for diverse funds, programs, projects, grants, funding sources, and departments. Achieve financial excellence with Fund EZ's all-in-one solution!

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ChurchTrac logo

Online church management software

ChurchTrac is a church management software with features for membership management, donation tracking, accounting, reporting and attendance management

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Chmeetings logo

Church management software

ChMeetings is an all-in-one Church Management Software trusted by 7,000+ churches. Manage members, events, giving, volunteers, child check-in, and more. Includes a member portal, branded mobile app, and built-in church accounting.

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MoneyMinder logo

Simple accounting software for volunteers.

Simple nonprofit accounting software for volunteer-based groups (PTAs, PTOs, Booster Clubs, Sports Teams, Scouts, Service Clubs, etc.)

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MonkeyPod logo

Your all-in-one nonprofit management platform

MonkeyPod is an all-in-one platform to manage nonprofit accounting, donor management, grants management, CRM, email marketing, online fundraising, and more. Add unlimited users, CRM entities, email subscribers, online fundraising pages, pipelines, and more at no additional cost.

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ExpensePlus logo

Brilliant Fund Accounting Software for Charities

ExpensePlus is a cloud-based fund accounting software meticulously designed for churches, charities, and community groups. It offers efficient expense management, donation tracking, and comprehensive financial reporting, tailored to simplify and enhance financial processes.

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Daxko Operations logo

Membership management software for non-profit organizations

Complete operations software for member-based nonprofits - integrating programs, billing, and check-ins in one secure system.

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Gracely logo

Gracely streamlines church management for all sizes.

Gracely is a comprehensive church management software designed to enhance the efficiency, effectiveness, and security of churches, regardless of their size. It provides an extensive array of features to meet the needs of the church.

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Icon Church Management logo

Church management software

IconCMO is a church management solution for ministries of all sizes. The cloud-based solution provides tools such as member management, visitor tracking, communications, donor management, fund accounting, child check-in, event registration, and more to help churches manage their operations online.

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DLS Financials logo

The premier savings and loan software for dioceses!

The premier savings and loan software for diocese to manage deposits/loans/pooled investment management software for over 22 years!

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AccountsIQ logo

Cloud-based accounting software for medium-sized businesses

AccountsIQ is cloud-based accounting software that assists businesses in construction, retail, hospitality, and other sectors with cash flow forecasting, budgeting, and financial reporting.

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Kashoo logo

Small business accounting made easy.

Kashoo is simple cloud accounting for small business owners who want the control and simplicity of doing their own books. It provides them with the ability to run their business the way they want to, with tools for invoice management, payment processing, reporting, and more.

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Limelight logo

Meet Excel-free FP&A

Excel-free FP&A means no add-ins, broken links, or version chaos. Plan, forecast, and report from one connected platform.

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Yapla logo

All-in-one payment and management platform for NPOs.

Yapla allows businesses to manage member data, create events and start accepting donations and payments in 5 minutes. Designed by and for associations, Yapla is an all-in-one payment and management platform that gives you the time to accomplish your mission.

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Grain Ledger logo

Fund-based accounting software for churches

Grain Ledger is a cloud-based accounting software designed specifically for churches and ministries. The platform features fund-based accounting that tracks donations, manages expenses, and generates GAAP-compliant financial reports. It integrates with church management systems and includes automated invoice processing, real-time budget tracking, and donor contribution monitoring.

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Quantibly logo

Nonprofit software

Quantibly is a web-based software that helps businesses synthesize data from all aspects of nonprofit operations, including governance, finance, fundraising, sales, products and services, and partnerships, and connect them to impact benchmarks.

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Diamant/4 logo

Accounting & controlling automation system

Diamant/4 is a comprehensive accounting and controlling software that manages finances and automates business processes for organizations with complex financial structures. The modular system builds upon a core financial accounting module with optional extensions for invoice management, asset accounting, reporting, and group accounting. Its flexible integration capabilities allow seamless connection with existing IT landscapes through standardized interfaces and APIs.

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Xledger logo

Empower ambition with Xledger.

Xledger is a true cloud finance management platform, founded in 2000, and trusted by 100,000+ users worldwide. It automates accounting, unifies multi-entity reporting, and delivers real time insights, helping organisations modernise finance and outperform traditional ERPs

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omniBooks logo

The all-in-one cloud financial and accounting software

Powerful online accounting software for all your business finance management needs. Grow and track your business with omniBooks.

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Scopevisio logo

Simplify your daily business with Scopevisio.

Scopevisio is the cloud-based business software that automates commercial processes, aligns your company more profitably and thus makes it fit for the digital future.

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TrulySmall Accounting logo

Small business accounting, simplified.

TrulySmall Accounting is the ideal accounting solution for sole proprietors and freelancers. Simple, automated, and zero bloat.

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Springly logo

All-in-one nonprofit software for day-to-day management

Springly, a brand of AssoConnect, is an all-in-one nonprofit management software. It helps organizations save time on daily management with features for fundraising, accounting, website building, emailing, and more. Rated 4.7/5 stars on Google, Springly has over 30,000 happy customers.

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Tangicloud logo

Nonprofit accounting software

Tangicloud is a nonprofit accounting software that helps businesses manage accounts, invoices, and expenses. The platform enables managers to monitor and manage the financial health of businesses by providing real-time insights into account balances and transactions, as well as reporting tools.

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