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Nonprofit Accounting Software for Windows

Last updated: February 2026

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32 software options

Fund EZ logo

Fund EZ

Accounting Software Built for Your Nonprofit

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Empower your nonprofit with Fund EZ! Effortlessly create and track budgets for diverse funds, programs, projects, grants, funding sources, and departments. Achieve financial excellence with Fund EZ's all-in-one solution!

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Aplos logo

Aplos

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Aplos: where every dollar finds its purpose

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Aplos provides the robust accounting framework necessary to track restricted vs unrestricted funds and generate comprehensive, auditor-friendly reports. Our features are crafted to aid budgeting, automate complex allocations, and provide real-time insights into your financial health.

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MIP Accounting logo

MIP Accounting

Fund accounting for government organizations and nonprofits

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MIP Fund Accounting is a comprehensive, configurable fund accounting solution designed to meet and handle the complex financial management and fund accounting needs of nonprofit and government organizations.

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QuickBooks Enterprise logo
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Enterprise accounting, FSM and inventory management solution

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QuickBooks Desktop Enterprise is an accounting software for small businesses which provides users with real-time access to customer, employee, and vendor information. The software includes tools for managing inventory, shipping, sales orders, pricing, tasks, invoicing, reporting, and more.

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QuickBooks Online logo
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Accounting and business management software

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QuickBooks Online is an all-in-one online business software designed to help manage business finances. The platform is built to scale businesses, unlocking insights and providing the functionality of a larger team, all on one integrated platform.

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Sage Accounting logo

Accounting software for small businesses

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Sage Accounting is an accounting system for small business owners. It has features to help users forecast their cashflow, send and track invoices and act on real-time reporting. Users can manage their business from anywhere, at any time, from the cloud and with mobile functionality. Sage Accounting application is available for iOS and Android.

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MoneyMinder logo
Category Leaders

Simple accounting software for volunteers.

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Simple nonprofit accounting software for volunteer-based groups (PTAs, PTOs, Booster Clubs, Sports Teams, Scouts, Service Clubs, etc.)

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OneStream logo

Corporate performance management solution for enterprises

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OneStream is a unified corporate performance management (CPM) solution which enables businesses to manage their financial reporting, budgeting & forecasting

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Martus logo

Budgeting & accounting for churches

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MartusTools is a cloud-based budgeting & accounting solution designed to help churches streamline their budgeting & accounting processes with online dashboards, scorecards, statistics, & financial reports like departmental account views, dimensional view summaries, forecast views, & more

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Multiview ERP logo

Enterprise resource planning (ERP) solution

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Multiview is a highly-scalable modular ERP software for scaling organizations which require more automation, control and insight into their operations. A fully-integrated suite of financials ranges from core accounting, budgeting and forecasting to materials management and workflow approvals.

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MYOB Business logo

Online accounting & payroll for every business

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Small Business cloud based accounting software to automate payroll, manage financial performance, tax and all your accounting needs.

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Denali Fund logo

Nonprofit accounting software

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Denali FUND by Cougar Mountain Software is a cloud-based and on-premise accounting software designed specifically to help nonprofit organizations streamline & manage all accounting processes, including accounts payable & receivable, general ledger, bank reconciliation, payroll, and more

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Springly logo

All-in-one nonprofit software for day-to-day management

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Springly, a brand of AssoConnect, is an all-in-one nonprofit management software. It helps organizations save time on daily management with features for fundraising, accounting, website building, emailing, and more. Rated 4.7/5 stars on Google, Springly has over 30,000 happy customers.

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AccuFund Accounting Suite logo

Online and Onsite Accounting Software for Nonprofits & Govt

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AccuFund’s complete nonprofit financial management system improves all critical aspects of your nonprofit, from budget development to grants management to payroll and HR and accounts payable, selecting the modules that your nonprofit needs now and add others in the future as needs evolve.

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Clay logo

Software contable y financiero en Chile

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Clay es el software contable y financiero en la Chile que conecta a contadores y dueños de negocio en un mismo lugar. Es el punto de encuentro donde ambos pueden trabajar con la misma información, siempre actualizada y respaldada desde sus fuentes de verdad: 14 bancos, SII y TGR.

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Infor SunSystems logo

Financial management software that can adapt to any market

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Infor SunSystems is designed to help businesses handle accounting management, including nominal ledger, payables, and receivable ledgers, cashbook, multi-currency, and multi-dimensional analysis from one single source.

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SylogistMission ERP logo

Fund accounting solution for non-profit organizations.

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Serenic Navigator for NPO is a cloud-based and on-premise fund accounting solution which helps non-profits manage resources, programs, and finances on a unified platform. It allows users to have complete visibility into the budgets and expenditures required to manage funding sources and programs. The software delivers several functions including donor management, payroll processing, human resources, budget tracking, grant management, encumbrance, and more.

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NextWare Pro logo

Non-profit management solution

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NextWare Pro is a non-profit management solution that helps give users more time and resources to focus on their cause.

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Adfinity logo

Accounting and financial management software

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Adfinity is one of the most complete accounting software packages, offering a large variety of advanced financial management features. Adfinity brings added value in reporting, automation, digitalization of workflows and paperless working.

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Banana Accounting logo

Accounting software.

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Traditional columnar accounting in a modern form, similar to Excel. Professional, easy and fast. Based on double-entry bookkeeping, it is ideal for any small business, association, private person and for teaching bookkeeping.

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Sparkrock logo

Finance & Human Resources Software Suite.

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Sparkrock 365 is a cloud-based enterprise resource planning (ERP) software that’s designed specifically for the needs of Not-for-Profit organizations. Sparkrock 365 integrates finance, workforce management, payroll and employee scheduling.

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Impactfully logo

Innovative cloud tools for philanthropy.

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Foundation Source empowers people and companies to create a better world through philanthropy. They make giving easier for more than 2,000 private foundations with innovative technology backed by philanthropic expertise.

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Aptean Industrial Manufacturing ERP Traverse Edition logo

Discrete manufacturer ERP with mobile access and automation

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Aptean Industrial Manufacturing ERP Traverse Edition is an ERP software tailored for discrete manufacturers. The solution is built on Microsoft technologies, providing businesses with a customizable platform that integrates with a variety of tools including Aptean Ship, Aptean Pay, and BI for real-time data analytics and decision-making.

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NonProfitPlus logo

Software for nonprofit organizations, management of grants

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Native Grant Management software; Track Grants from award to expiration. Flexible reimbursement process with revenue recognition. Budget checking to protect from overspending with many Inquiries. Beneficial for nonprofits looking for Nonprofit accounting software starting @ 725.00 per month.

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Billit logo

Online invoicing platform for businesses and accountants

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Billit is an e-platform that provides businesses with financial management tools. Key features include invoicing, making payments, and cost tracking. Documents can be digitized, and the platform supports integration with other solutions, such as customer relationship management software.

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