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Top Rated Bookkeeper Software with Invoice Processing in 2026

Verified reviewer profile picture
Verified reviewer profile picture

All user reviews are verified by in-house moderators and provider data by our software research team.  Learn more

Last updated: February 2026

Invoice processing streamlines the creation, management, and reconciliation of invoices. It ensures timely payments, simplifies tracking of accounts receivable and payable, and reduces manual effort by automating reminders and integrating with other systems. Our reviewers in bookkeeper software rated this feature as highly important.

5 Best Bookkeeper Software with Invoice Processing

Product
User rating
Starting price
Xero logo
4.4
(3.2K)
25
flat rate/per month
visit website
QuickBooks Enterprise logo
4.5
(20.5K)
2210
flat rate/per year
visit website
Melio logo
4.2
(400)
25
per user/per month
visit website
Wave logo
4.4
(1.7K)
19
flat rate/per month
QuickBooks Online logo
4.3
(8.3K)
38
flat rate/per month

See other top Bookkeeper products with invoice processing

How we picked the 5 top rated products

We chose the high-performing solutions on this list based on verified user ratings on our site. Depending on available data, qualifying products either had to be among the most user-reviewed or the most searched-for products in the Bookkeeper software category. They also needed to have sufficient reviews about invoice processing, have a minimum user rating of 3 out of 5 for that feature, and show evidence of U.S. market presence. We then added a distinction for up to three products based on our proprietary ratings and reviews: Highest rated, Highly rated for invoice processing, and Highly rated for free version. Sponsorship or client status has no influence on the selection of these products, but it may impact the order in which products appear.

Details for the 5 best products

Xero logo

Xero

Reviews Sentiment
 
 
 
1-2(157)
3-4(1,150)
5(1,943)
Key Features
Accounting4.6
Income & Balance Sheet4.6

User insights about the invoice processing feature

Reviewers appreciate Xero's invoice processing for its simplicity, automation, and ease of use. They find it efficient for creating, managing, and reconciling invoices, with helpful features like automated repeating invoices and integration with external payment platforms. However, some users note limitations in customization and the need for additional programs for certain tasks.

See related user reviews

“Xero offers a range of features for invoice processing, which can help businesses streamline their accounts payable processes and reduce the time and effort required to manage invoices.”
MK

Mehdi K.

Mehdi

“The ability to have multiple charges on an invoice and for it to look professional before being sent to clients is very important to us. The invoicing in Xero meets both of these criteria very well.”
BG

Bonnie G.

Controller

Starting price
25flat rate /
per month
visit website
Pros and Cons based on 3,250 verified reviews

Cloud accounting accessibility

Customizable dashboard

Effective bookkeeping tools

Accessible learning resources

User-friendly interface

Slow issue resolution

Poor customer support

Limited inventory management

Lack of live support

Underdeveloped mobile access

See pros and cons details
QuickBooks Enterprise logo

QuickBooks Enterprise

Reviews Sentiment
 
 
 
1-2(352)
3-4(7,707)
5(12,534)
Key Features
Accounting4.6
Income & Balance Sheet4.6

User insights about the invoice processing feature

Reviewers appreciate QuickBooks Enterprise's invoice processing capabilities for their ease of use, efficiency, and reliability. They find it simple to create, send, and track invoices, with features like email integration and automated reminders. Users also value the ability to save client details, integrate with bank accounts, and maintain historical data, although some note limitations in handling special pricing and high transaction volumes.

See related user reviews

“The invoice processing in QuickBooks Desktop Enterprise is very user-friendly. It is easy to navigate and makes creating invoices very simple. It also stores a history of all invoices which is helpful for tracking payments and ensuring that invoices are paid in a timely manner.”
BT

Brahim T.

Freelancer

“With the way QB integrates with out bank account, it is very easy to record and track all invoices to vendors. We are also able to attach the PDF of the invoice itself for record keeping.”
CS

Carolyn S.

Office Manager

Starting price
2210flat rate /
per year
visit website
Pros and Cons based on 20,593 verified reviews

Comprehensive expense tracking

Ideal for small businesses

Effective financial management

Streamlined bookkeeping

Efficient tax management

Frequent issue resolution challenges

Slow performance speed

Disruptive software updates

High cost concerns

Unreliable customer service

See pros and cons details
Melio logo

Melio

Reviews Sentiment
 
 
 
1-2(61)
3-4(77)
5(262)
Key Features
Accounting4.0
Income & Balance Sheet

User insights about the invoice processing feature

Users find Melio's invoice processing easy and efficient, with simple inputs and the ability to upload invoices quickly. They appreciate the integration with QuickBooks, automated payment processing, and the approval system. However, some reviewers mention issues with payment cancellations and the feature being less important for their specific needs.

See related user reviews

“The invoicing helps alot as when you start to send or anout to receive you are already set as the invoicing eases use.”
ND

Ntokozo D.

Owner

“It makes it easier for me to easily process my invoice to my Customers and Clients to do some job ”
JB

Joel B.

Marketer

Starting price
25per user /
per month
visit website
Pros and Cons based on 400 verified reviews

Efficient integration workflow

Seamless accounting integration

Intuitive user interface

Unreliable email support

Issues with money transfers

Inconsistent customer service

See pros and cons details
Wave logo
Reviews Sentiment
 
 
 
1-2(108)
3-4(553)
5(1,049)
Key Features
Accounting4.5
Income & Balance Sheet4.5

User insights about the invoice processing feature

Reviewers highlight Wave's invoice processing for its ease of use, customization options, and automated reminders. They appreciate the ability to create recurring invoices, apply discounts, and follow up on payments. Users also value the fast processing and professional look of invoices, though some mention issues with handling overpayments and slow ACH payment processing.
Verified reviewer profile picture

See related user reviews

“Invoices can be easily customized and you can create recurring invoices with automated reminders so that even if you do forget, the customer can be reminded to pay you. Now you can also add discounts on invoices and they are applied before taxes. ”
Verified reviewer profile picture

Rose G.

Land surveyor

“I'm happy with how easy it is to create invoices and process the payments. All unpaid invoices are on one page and you can send reminders to the clients too. Partial payments can be processed and it gives you a clear indication of what is outstanding.”
DD

Dina D.

Business Owner

Starting price
19flat rate /
per month
Pros and Cons based on 1,710 verified reviews
Verified reviewer profile picture

Affordable for small businesses

Intuitive and modern interface

Excellent value for small businesses

Comprehensive invoicing features

Effective bookkeeping solution

Slow performance and load times

Ineffective email communication

Limited customer support options

Unresolved software issues

Challenging bank reconciliation

See pros and cons details
QuickBooks Online logo
Reviews Sentiment
 
 
 
1-2(454)
3-4(3,126)
5(4,748)
Key Features
Accounting4.5
Income & Balance Sheet4.5

User insights about the invoice processing feature

Users find QuickBooks Online's invoice processing straightforward and efficient, with easy creation, customization, and tracking of invoices. They appreciate features like automated reminders, integration with other software, and the ability to send invoices directly from the platform. However, some reviewers mention issues with credit card processing, payment holds, and the need for better customer support.

See related user reviews

“QuickBooks invoicing makes billing and collecting payments efficient. The system is designed to alert managers when payments are received, still open, and overdue. This is helpful in analysis and following up with collections. ”
BT

Benita T.

Loan Counselor

“I like how Invoice Processing in QuickBooks Online streamlines my billing process, saving me time and effort. I can easily create and send customized invoices to customers, and track payments with ease. ”
km

kgomotso m.

Manager

Starting price
38flat rate /
per month
Pros and Cons based on 8,328 verified reviews

Cloud-based accessibility

Ideal for small businesses

Seamless integrations

Comprehensive accounting features

Efficient tax management

Frequent bugs and crashes

Limited desktop features

Recurring costs and price increases

Inadequate customer support

Complicated transaction management

See pros and cons details

Other Top Rated Bookkeeper Software with Invoice Processing in 2026

Accounting Seed logo

Accounting Seed

Category Leaders

Accounting and analytics software built on Salesforce

visit website
Accounting Seed is an accounting application built natively on Salesforce. Its customizable, enabling users to manage their accounting their way. As a full accounting solution, Accounting Seed tracks financial data through the entire business lifecycle.

Read more about Accounting Seed

Users also considered
Eleven logo

Eleven

Category Leaders

Cloud accounting software tailored for accounting firms

visit website
Eleven is a cloud accounting app that helps small and medium-sized accounting firms to streamline and scale their practice. You can automate bookkeeping for every client without falling back on Excel.

Read more about Eleven

Users also considered
TaxDome logo

Tax practice management software for bookkeepers and CPAs

TaxDome is a leading practice management platform for tax, bookkeeping and accounting firms, as well as CPAs and EAs. TaxDome allows firms of all sizes to streamline and maintain oversight of their practice by using one platform for both internal practice management and client-facing tools.

Read more about TaxDome

Users also considered
QuickBooks Online logo
Category Leaders

Accounting and business management software

QuickBooks Online is an all-in-one online business software designed to help manage business finances. The platform is built to scale businesses, unlocking insights and providing the functionality of a larger team, all on one integrated platform.

Read more about QuickBooks Online

Users also considered
Xero logo
Category Leaders

Cloud-based accounting software for small businesses

Xero is an online accounting and bookkeeping solution designed to simplify collaboration between bookkeepers and their clients, available on any computer or mobile device with an internet connection. Automate your admin tasks and manage clients with all-in-one accounting and bookkeeping software.

Read more about Xero

Users also considered
Wave logo
Category Leaders

Accounting, invoicing, and payroll management platform

Wave is an integrated solution designed for small businesses. With our automatic bank connections, information flows into Wave, without manual entry. Users can collaborate with accountants or bookkeepers in real-time.

Read more about Wave

Users also considered
Abby logo

Billing and invoicing platform

Abby helps businesses ensure that customer documents are legal and comply with the rules. Customers can pay online and receive reminders for late payments.

Read more about Abby

Users also considered
QuickBooks Online Advanced logo
Category Leaders

Accounting & business management for small businesses

QuickBooks Online Advanced is a web-based accounting & business management solution which enables small businesses to track sales, inventory, financial accounts & payroll from a single dashboard

Read more about QuickBooks Online Advanced

Users also considered
Stampli logo

Stress-free finance operations

Stampli's AP automation solution centers on the AP process to drive efficiency across the procure-to-pay lifecycle — including payments, credit cards, vendor engagement and more.

Read more about Stampli

Users also considered
Bright logo

Brilliant people use Bright software

Bright offers a suite of industry-leading software solutions for accountants, bookkeepers and SMEs across the UK and Ireland.

Read more about Bright

Users also considered
A2X logo

Accurate ecommerce accounting, without the fuss.

A2X automates ecommerce accounting for Shopify, Amazon, Etsy, eBay & Walmart sellers. Trusted by ecommerce accountants worldwide.

Read more about A2X

Users also considered
Lightyear logo

Intelligent Purchasing & AP Automation Platform

Lightyear: Intelligent automation for finance teams. Automate approvals, extract data, customize workflows, collaborate seamlessly. Boost efficiency with advanced automation and collaboration tools.

Read more about Lightyear

Users also considered
Veryfi logo

AI OCR APIs to Transform Documents Into Data in Seconds

Veryfi OCR API & SDK turns unstructured data, such as receipts, bills, invoices, and other documents, into structured data (with line items) in seconds using machine-based data extraction. The platform offers features including a drag and drop processor, document inbox, data export, and more.

Read more about Veryfi

Users also considered
BILL Accounts Payable & Receivable logo

BILL, a leader in financial automation software for SMBs

BILL (NYSE: BILL) is a leader in financial automation software for small and midsize businesses. We are dedicated to automating the future of finance so businesses can flourish.

Read more about BILL Accounts Payable & Receivable

Users also considered
Online Check Writer logo
Category Leaders

Software for managing payments and accounting operations

OnlineCheckWriter.com is check printing software and a B2B payment platform with 30+ business payment tools. Pay and get paid with checks, eChecks, ACH, wires, international payments, and credit cards. Connects with QuickBooks, Xero, and more.

Read more about Online Check Writer

Users also considered
Sage Accounting logo
Category Leaders

Accounting software for small businesses

Sage Accounting is an accounting system for small business owners. It has features to help users forecast their cashflow, send and track invoices and act on real-time reporting. Users can manage their business from anywhere, at any time, from the cloud and with mobile functionality. Sage Accounting application is available for iOS and Android.

Read more about Sage Accounting

Users also considered
Melio logo

Accounts payable platform for businesses of all sizes

Melio simplifies bill payments for bookkeepers. Pay vendors online via bank transfer or card—even if they don’t accept cards. Integrates with QuickBooks and Xero for automatic syncing. Get started with your 30 day free trial!

Read more about Melio

Users also considered
Payhawk logo

Spend management platform that automates expense processing

Payhawk is a spend management platform that automates expense management and provides real-time visibility and control over corporate spending. The platform integrates with linked business credit cards, enabling users to collect receipts at the point of sale and automatically match transactions to receipts. Its AI-powered technology processes receipts and invoices, automatically categorizing and routing expenses for approval to ensure an efficient spending culture.

Read more about Payhawk

Users also considered
Firm360 logo

Built for accountants by accountants to simplify your firm.

Firm360 is the all-in-one platform built for accountants by accountants to simplify the work behind the workflow. From project management to client communication and billing, we help accounting firms operate with clarity, supported by expert training and responsive support.

Read more about Firm360

Users also considered
FreeAgent logo

FreeAgent has been voted the UK's #1 accounting software.

FreeAgent’s award-winning online accounting software is designed specifically for small businesses and freelancers. Over 100,000 customers use FreeAgent to keep their business admin on track.

Read more about FreeAgent

Users also considered
Sage 100 logo
Category Leaders

Enterprise resource planning software

Sage 100 is a customizable business management solution that helps businesses automate financials, operations, and payroll, providing complete visibility into the operations. Sage 100 grows with the business, allowing teams to scale and meet specific needs as a small or medium-sized enterprise.

Read more about Sage 100

Users also considered
Sage 50 Accounting logo
Category Leaders

Cloud-based accounting tool for small and midsized business

Sage 50 Accounting is an online accounting solution for SMBs with Office 365 integration that helps manage accounting, invoicing, cash flow, inventory, taxes, and more.

Read more about Sage 50 Accounting

Users also considered
Kashoo logo

Online accounting software for small businesses

Kashoo is simple cloud accounting for small business owners who want the control and simplicity of doing their own books. It provides small business owners with the ability to run their business the way they want to, with tools for invoice management, payment processing, reporting, and more.

Read more about Kashoo

Users also considered
Quadient Accounts Payable Automation logo

AI-powered accounts payable automation

Quadient Accounts Payable Automation empowers accounting teams to manage AP from anywhere. With AI-powered data entry and approval workflows for invoices, POs, payments and expenses, Quadient Accounts Payable Automation is a centralized platform providing 360-degree visibility and control for AP.

Read more about Quadient Accounts Payable Automation

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Adaptive logo

Finance Management for Construction

Adaptive is the premier finance management product tailored for the construction industry.

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Key features for Bookkeeper software

Based on GetApp's analysis of verified user reviews collected between July 2021 and August 2024.

  • Accounting: Users value the software for streamlining financial tasks, enhancing accuracy, and providing detailed insights, which improve overall business efficiency. 98% of reviewers rated this feature as important or highly important.
  • Income & Balance Sheet: Reviewers find the feature useful for accurately tracking revenue, assessing profitability, and making informed financial decisions with customizable and user-friendly reporting. 94% of reviewers rated this feature as important or highly important.
  • General Ledger: Reviewers highlight the detailed tracking of financial transactions, customizable categories, and ease of generating comprehensive reports for accurate financial management. 93% of reviewers rated this feature as important or highly important.
  • Bank Reconciliation: Users value the efficient process, automated transaction matching, and integration with bank accounts, which ensure accurate financial records and save time. 91% of reviewers rated this feature as important or highly important.
  • Payroll Management: Reviewers appreciate automated calculations, tax filings, and direct deposits, which simplify payroll processing and improve compliance with tax obligations. 91% of reviewers rated this feature as important or highly important.