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Top Rated Leave Management System Software with Paychex flex

Last updated: June 2026

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17 software options

Buddy Punch logo

Effortless Time Tracking, Scheduling & Payroll Management

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Buddy Punch’s leave management system makes PTO a breeze—employees submit time-off requests on web or mobile, managers approve with one click, and accruals and balances update automatically to ensure compliance.

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Jibble logo

Meet the new standard in employee time tracking.

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The 100% free time tracking and attendance software for deskless teams, helping prevent buddy punching and time theft with GPS tracking, facial recognition, and automated timesheets.

It's easy-to-use, and free forever for unlimited users.

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Built logo

Cloud Based Solution for Time Off Tracking, Org Chart & More

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The Built for Teams PTO Tracking platform delivers a way for employees to request time off and view their remaining balance at any time. Managers can approve time off and employees notified via email of approval. Notifications can also show any overlapping requests and who will cover while gone.

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Timesheets.com logo

Time tracking, payroll, and billing for businesses

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Timesheets.com tracks time-off as well as time for payroll and billing to produce reports and exports for software like QuickBooks or ADP.

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ClayHR logo

YOUR HR APPLICATION FRAMEWORK

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ClayHR allows you to manage and handle leave requests digitally without any involvement in paperwork. This can also be tracked in the shared calendar and reports.

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Workforce.com logo

Hiring, scheduling, time tracking, HR, and payroll solution.

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Workforce.com is a cloud-based, all-in-one solution for shift-based businesses looking to manage scheduling, attendance, HR, and payroll.

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Inspire logo

Cloud-based and AI-enabled performance management solution

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Inspire is a cloud-based and AI-enabled performance management solution designed to help organizations of all sizes manage objectives through OKR and goal setting methodologies. Key features include team collaboration, employee recognition, progress tracking, reporting, and analytics.

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Connecteam logo

Enhance employee management with the only all-in-one app

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Connecteam — is a simple yet capable time management app for deskless employee time tracking, timesheets, breaks & absences management.

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WorkforceHub Time & Attendance logo

Time and attendance tracking for on-site and remote teams

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WorkforceHub from SwipeClock provides multi-location businesses of any size with timekeeping and attendance tracking for on-site and remote employees. Features include timesheets, webclock, compliance management, mobile application, complete timecard history, geofencing, custom fields, and more.

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Deputy logo

Staff scheduling and attendance tracking solution

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Deputy simplifies leave management by letting employees request time off and view balances via mobile. Managers get real-time visibility to approve requests, adjust schedules, and maintain coverage. Integrated compliance and payroll tools ensure accurate records and hassle-free time-off management.

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TeamKeeper logo

Time and attendance tracking with QuickBooks integration

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TeamKeeper, formerly known as Clockwise, is web-based timesheet management software that includes time and attendance tracking, leave management, native mobile apps and QuickBooks integration

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AMGtime logo

Employee time clock and attendance tracking with biometrics

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AMGtime is an employee time clock and attendance tracking solution for businesses. It offers a suite of features scalable to any industry and business of any size including large, complex corporations. AMGtime offers geofencing and biometric hardware with face, palm, and fingerprint recognition.

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KENJO logo

Workforce Management for SMBs.

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Kenjo is workforce management software for SMBs. Handle staffing tasks faster—from scheduling and payroll prep to tracking hours. Dive into what drives your team with feedback and analytics. Plus, the mobile app keeps everyone synced, and hiring will become a breeze.

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Tanda logo

Roster and pay your staff with confidence.

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Australia’s leading rostering, attendance and award interpretation software.

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TimeClock Plus logo

Accurate time tracking for better bottom lines

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With automated time tracking, easy leave and accrual management, and comprehensive compliance management, TimeClock Plus by TCP simplifies even the most complex time and attendance needs. From avoiding payroll mistakes and controlling labor costs, to adhering to labor laws and regulations.

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WebHR logo

Human resources and employee scheduling solution

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WebHR is a cloud-based human resource management (HRM) solution that helps businesses simplify HR tasks. From recruitment and onboarding to payroll and performance management, WebHR offers a comprehensive solution to manage the entire employee lifecycle. Its comprehensive interface and features make HR processes efficient, reducing administrative burdens and ensuring compliance.

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PTO Genius logo
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Next-Generation Time Off Tracking and Absence Management

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PTO Genius is next-generation absence management that saves companies time and money by streamlining time off management and compliance. Easily integrate with third-party services like Slack, Teams, Calendars and the most popular HRIS's. SOC 2 compliant fully encrypted single-tenant architecture.

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