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Top Rated Nonprofit Accounting Software with Small business

Last updated: September 2026

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29 software options

Fund EZ logo

Accounting Software Built for Your Nonprofit

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Empower your nonprofit with Fund EZ! Effortlessly create and track budgets for diverse funds, programs, projects, grants, funding sources, and departments. Achieve financial excellence with Fund EZ's all-in-one solution!

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Aplos logo

Aplos: where every dollar finds its purpose

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Aplos provides the robust accounting framework necessary to track restricted vs unrestricted funds and generate comprehensive, auditor-friendly reports. Our features are crafted to aid budgeting, automate complex allocations, and provide real-time insights into your financial health.

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QuickBooks Enterprise logo

Enterprise accounting, FSM and inventory management solution

QuickBooks Desktop Enterprise is an accounting software for small businesses which provides users with real-time access to customer, employee, and vendor information. The software includes tools for managing inventory, shipping, sales orders, pricing, tasks, invoicing, reporting, and more.

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MoneyMinder logo

Simple accounting software for volunteers.

Simple nonprofit accounting software for volunteer-based groups (PTAs, PTOs, Booster Clubs, Sports Teams, Scouts, Service Clubs, etc.)

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MonkeyPod logo

Your all-in-one nonprofit management platform

MonkeyPod is an all-in-one platform to manage nonprofit accounting, donor management, grants management, CRM, email marketing, online fundraising, and more. Add unlimited users, CRM entities, email subscribers, online fundraising pages, pipelines, and more at no additional cost.

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ZipBooks logo

Accounting and online invoicing software

ZipBooks is a cloud-based accounting software that caters to the bookkeeping and accounting needs of small to medium-sized businesses and bookkeeping firms. The solution offers core accounting, financial reporting, online invoicing, expense tracking, credit card processing, and more.

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Daxko Operations logo

Membership management software for non-profit organizations

Complete operations software for member-based nonprofits - integrating programs, billing, and check-ins in one secure system.

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Kashoo logo

Small business accounting made easy.

Kashoo is simple cloud accounting for small business owners who want the control and simplicity of doing their own books. It provides them with the ability to run their business the way they want to, with tools for invoice management, payment processing, reporting, and more.

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Icon Church Management logo

Church management software

IconCMO is a church management solution for ministries of all sizes. The cloud-based solution provides tools such as member management, visitor tracking, communications, donor management, fund accounting, child check-in, event registration, and more to help churches manage their operations online.

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QuickBooks Online Advanced logo

Accounting & business management for small businesses

QuickBooks Online Advanced is a web-based accounting & business management solution which enables small businesses to track sales, inventory, financial accounts & payroll from a single dashboard

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NextWare Pro logo

Non-profit management solution

NextWare Pro is a non-profit management solution that helps give users more time and resources to focus on their cause.

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Impactfully logo

Innovative cloud tools for philanthropy.

Foundation Source empowers people and companies to create a better world through philanthropy. They make giving easier for more than 2,000 private foundations with innovative technology backed by philanthropic expertise.

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B1 Unity logo

Reducing involuntary errors and allowing access to key infor

Reducing involuntary errors and allowing access to key information. With an intuitive interface that can soon become part of their working day-to-day, Solidarity Associations and Employee Cooperatives achieve integration in less time and with greater simplicity than ever before. This allows them to devote maximum attention to processes while saving time traveling and with the security that comes from a high-quality system

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omniBooks logo

The all-in-one cloud financial and accounting software

Powerful online accounting software for all your business finance management needs. Grow and track your business with omniBooks.

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TrulySmall Accounting logo

Small business accounting, simplified.

TrulySmall Accounting is the ideal accounting solution for sole proprietors and freelancers. Simple, automated, and zero bloat.

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Springly logo

All-in-one nonprofit software for day-to-day management

Springly, a brand of AssoConnect, is an all-in-one nonprofit management software. It helps organizations save time on daily management with features for fundraising, accounting, website building, emailing, and more. Rated 4.7/5 stars on Google, Springly has over 30,000 happy customers.

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Infor SunSystems logo

Powerful financial control. Simplified in the cloud.

Infor SunSystems Cloud is a flexible financial management solution that helps complex organizations manage accounting, compliance and reporting with confidence. It delivers powerful general ledger capabilities, real-time insight and cloud-based resilience.

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Banana Accounting logo

Accounting software.

Traditional columnar accounting in a modern form, similar to Excel. Professional, easy and fast. Based on double-entry bookkeeping, it is ideal for any small business, association, private person and for teaching bookkeeping.

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Volaby logo

Volunteer management software for nonprofit organizations

Volaby is a volunteer management platform for the nonprofit sector. Key features include onboarding workflows for applications, opportunity management for volunteer selection, and managerial overviews of all operations and personnel. It also includes communication and data analysis tools.

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AccuFund Accounting Suite logo

Online and Onsite Accounting Software for Nonprofits & Govt

AccuFund’s complete nonprofit financial management system improves all critical aspects of your nonprofit, from budget development to grants management to payroll and HR and accounts payable, selecting the modules that your nonprofit needs now and add others in the future as needs evolve.

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Denali Fund logo

Nonprofit accounting software

Denali FUND by Cougar Mountain Software is a cloud-based and on-premise accounting software designed specifically to help nonprofit organizations streamline & manage all accounting processes, including accounts payable & receivable, general ledger, bank reconciliation, payroll, and more

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Billit logo

Online invoicing platform for businesses and accountants

Billit is an e-platform that provides businesses with financial management tools. Key features include invoicing, making payments, and cost tracking. Documents can be digitized, and the platform supports integration with other solutions, such as customer relationship management software.

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MNprogram logo

Sales management software for legal and medical industries

MNprogram is a cloud-based system designed to help businesses in legal, medical, healthcare, and other industries manage sales, customers, billing, accounting, and more. It enables supervisors to automate employee scheduling, run marketing campaigns, and store documents in a centralized repository.

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NetSuite logo

AI-powered cloud-based business management suite

NetSuite's ERP provides one integrated, cloud solution to manage your entire organization and accelerate your mission. Gain efficiencies with a powerful nonprofit fiscal management system built to meet the unique needs of your nonprofit.

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QuickBooks Online logo

Accounting and business management software

QuickBooks Online is an all-in-one online business software designed to help manage business finances. The platform is built to scale businesses, unlocking insights and providing the functionality of a larger team, all on one integrated platform.

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