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Top Rated Nonprofit Project Management Software with Zendesk

Last updated: June 2026

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34 software options

Zoho Sprints logo

Agile project management for software development teams

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Zoho Sprints is a cloud-based agile project management platform supporting Scrum and Kanban frameworks, with built-in financial control, risk management, and quality assurance to plan, track, and deliver work with greater confidence — available on native mobile apps for iOS and Android.

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Clockify logo

Time tracking and employee scheduling solution

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Free time tracker for nonprofits helping track attendance and how much time volunteers spend on activities, check project status and expenses. Clockify is free for unlimited users, helps track time using a timer or enter time in an online timesheet.

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Flowlu logo

Work automation and team collaboration in one platform.

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Flowlu’s nonprofit project management helps organizations plan, track, and manage initiatives efficiently. Coordinate volunteers, allocate resources, and monitor budgets with task management, Gantt charts, and financial tracking. Improve collaboration and automate workflows!

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Airtable logo

AI-Powered, No-Code App Building Platform

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Airtable is the AI-powered app platform that unifies data, maximizes collaboration, and powers smarter workflows — no code required.

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ClickUp logo

Productivity platform for marketing agencies

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ClickUp is a productivity platform that helps businesses combine project management tools, AI capabilities, and collaboration features in a unified workspace. The system can integrate tasks, documents, goals, and chat functionality while offering AI-based agents that automate workflows and answer questions. ClickUp serves teams across various departments with enterprise-grade security certifications including SOC 2 Type II, ISO 27001, GDPR, and HIPAA compliance.

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TimeCamp logo

A 100% free time tracker for teams. Unlimited users for $0.

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TimeCamp is a 100% free time tracker for teams. Unlimited users for $0.

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Todoist logo

Task manager and to do list app for work and life

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Todoist is a task management and to-do list application that helps users organize personal and professional tasks across multiple devices. The platform features natural language input for task creation, custom filters for organizing tasks, calendar views for scheduling, and recurring task capabilities. Todoist offers team collaboration tools, project templates, and integrations with external applications.

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monday.com logo

Project management software

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monday.com is a cloud-based Work OS, where teams create workflow apps in minutes to run their processes, projects, and everyday work. Teams shape workflows and projects, code-free, with a platform that adapts to shifting needs, liberates teams from manual grunt work, and connects teams in a collaborative work space.

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Manifestly logo

Checklist app for recurring tasks and recurring processes

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Manifestly is a cloud-based checklist software with Slack integration, which allows teams to assign and schedule tasks, collect data, and use conditional logic to customize workflows. Other features of the platform include process documentation creation, checklist scheduling, task assignment & more.

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TrackingTime logo

Automatic Time Tracking for Productive Teams

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See the big picture and focus on the work that matters. Get a clear overview of progress to stay on top of everything and prioritize tasks.

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Teamwork.com logo

Profit from every client demand.

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Combining powerful project management and easily streamlined operations - we’re the only platform built for managing client projects, profitably.

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Harvest logo

Online time tracking, invoicing and project reporting

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Harvest is an easy online time-tracking software that can help you answer critical questions about your team's time and the health of your projects.

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Trello logo

Visual collaboration tool for shared project perspectives

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Trello is a project management tool that helps teams organize and manage their tasks. It caters to a range of industries and teams, from marketing to engineering. Trello's simple and intuitive interface makes it easy for any team to get started and stay on top of their work.

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Time Doctor logo

Smart Employee Time Tracking Software with Screenshots

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Time Doctor is a time tracking solution that provides detailed analytics of where your employees spend time during the work day. See websites and applications visited by your employees when working and screenshots of the computer screen every few minutes while they work.

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Project Insight logo

A complete picture of project work across teams and systems.

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Project Insight is project and portfolio management software for growing companies that centralizes and automates project work across teams and connected systems, giving leaders a complete picture of org-wide work so they can make confident, data-driven decisions.

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Flock logo

Communication and collaboration platform for teams

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Flock is a collaborative messaging app for teams which enables users to discuss projects and find and share information and ideas effectively and efficiently

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SwiftKanban logo

Kanban Software | Scrumban | Visual Project Management

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SwiftKanban by Digité is widely considered to be the most powerful Enterprise/ Portfolio Kanban and Visual Project Management tool for both collocated and distributed teams and enterprises.

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Hubstaff logo

Centralized app for time tracking and productivity metrics

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Hubstaff aids nonprofits in mission management with time tracking and volunteer scheduling. Integrates with QuickBooks and FreshBooks, offering a 30% discount for nonprofits. Features automated payroll and robust reporting to optimize funding and achieve goals. Available on mobile and desktop.

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Planview PPM Pro logo

Cloud project and application portfolio management solution

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Planview PPM Pro, formerly Innotas, is a project portfolio management tool for teams. It allows businesses to collect, manage, prioritize & execute projects by providing tools such as intake management, prioritization alignment, resource management, time tracking, dashboards, budget tracking & more.

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ITM Platform logo

Project, Program and Portfolio Management Software

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ITM Platform can be deployed within two weeks, aligning your project portfolio to the business strategy. Team members will learn how to use the fully-featured project and work management tools within a day, providing portfolio managers with access to the metrics that matter.

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SpiraPlan logo

Cloud-based platform for streamlining project management

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SpiraPlan is an integrated platform for managing each stage of every IT product and program. This Enterprise Agile Program Management system helps manage your programs, projects, and portfolios, as well as requirements, releases, iterations, tasks, risks, documents, and bugs/issues.

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Replicon Time Tracking logo

Cloud-based project time tracking platform

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Replicon Time is a leading cloud-based project time tracking platform that helps mid-market and enterprise organizations manage time, projects, and workforce operations with accuracy and confidence.

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Celoxis logo

AI-enabled platform for streamlining project management

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Celoxis empowers nonprofits by providing tools to manage projects, track resources, and monitor budgets efficiently. With customizable dashboards and real-time insights, teams can collaborate effectively, optimize workflows, and focus on their mission while maximizing impact and transparency.

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Pivotal Tracker logo

Agile project management tool for developers

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Pivotal Tracker is an award winning, easy to use collaboration and web-based project management software for agile development teams. It keeps everyone, even distributed teams focused and on the same page, with an integrated, always up to date story board.

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Hive logo

Where projects and teams come together.

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Hive is the all-in-one project management and collaboration platform that eliminates tool sprawl.

Manage projects with Gantt charts, Kanban boards, or calendars. Communicate through built-in chat and real-time collaborative notes. Track time, allocate resources, and set goals—all in one place.

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