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Accounting Software with Payment Reconciliation (2026)

Last updated: April 2026

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60 software options

QuickBooks Online logo

Accounting and business management software

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QuickBooks Online offers accounting with financial dashboards, invoice creation, online payment acceptance, expenses tracking, payroll & more.

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SAP Concur logo

Travel, expense and invoice, automated and in control

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SAP Concur is a leading cloud-based spend management solution that helps small, medium, and large businesses automate and simplify expense reporting, travel booking, and invoice processing. It’s designed to give organizations better control over their business spend by integrating near real-time data and using AI to audit 100% of transactions.

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Wave logo
Category Leaders

Accounting, invoicing, and payroll management platform

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Why is Wave the world's fastest-growing accounting software for small businesses? It's easy, fast, 100% free, and made for owner-operated businesses.

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NetSuite logo

AI-powered cloud-based business management suite

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NetSuite AI-powered accounting simplifies the process of recording transactions, managing AP and AR, and closing the books. NetSuite supports multiple currencies, languages, and compliance standards and ensures data is accessible securely worldwide.

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QuickBooks Online Advanced logo

Accounting & business management for small businesses

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Advanced accounting software for streamlined financial management, automation, and enhanced reporting for growing businesses.

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Bright logo

Brilliant people use Bright software

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Bright offers a suite of industry-leading software solutions for accountants, bookkeepers and SMEs across the UK and Ireland.

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Patriot Accounting logo
Category Leaders

Cloud-based accounting and payroll software

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Accounting Basic $20/month - flat rate, unlimited use
Accounting Premium $30/month - flat rate, unlimited use
Accounting Software for businesses in the United States. Keep track of all of your money easily with our patent pending cash to accrual toggle & so much more.

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A2X logo

Accurate ecommerce accounting, without the fuss.

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A2X automates ecommerce accounting for Shopify, Amazon, Etsy, eBay, Walmart, and PayPal sellers. Trusted by ecommerce accountants worldwide.

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Zoho Books logo
Category Leaders

Online accounting software for businesses of all sizes

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Zoho Books helps small businesses to manage all financial activity, from invoices and expenses, to sales and purchase orders, to taxes, reports, and bank feeds.

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Spendesk logo

Smart, trackable spending at work. From Approvals to Zen.

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Spendesk tracks all company spending, and assigns accounting codes for automatic reconciliation. The solution integrates with Xero and other accounting tools, thanks to a custom export.

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BILL Accounts Payable & Receivable logo

BILL, a leader in financial automation software for SMBs

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BILL (NYSE: BILL) is a leader in financial automation software for small and midsize businesses. We are dedicated to automating the future of finance so businesses can flourish.

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Sage Accounting logo

Accounting software for small businesses

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Sage Accounting is an accounting system for small business owners. It has features to help users forecast their cashflow, send and track invoices and act on real-time reporting. Users can manage their business from anywhere, at any time, from the cloud and with mobile functionality. Sage Accounting application is available for iOS and Android.

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Eleven logo

Cloud accounting software tailored for accounting firms

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Eleven helps accounting firms replace complexity with efficiency. Manage multiple entities, handle global clients, and scale operations from one powerful, cloud-based platform.

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Striven logo
Category Leaders

Collaborative ERP for business process management

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Simplify your billing, purchasing, and collections while you run better, faster reports and get complete visibility into your financial operations.

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Plooto logo

Accounts payable and receivable software

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Plooto fully integrates with QuickBooks and Xero to save you countless hours on your accounts payable and accounts receivable. Save countless hours with Plooto's end to end AP and AR workflow automation.`

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Reckon One logo

All small and medium-sized businesses.

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Easy to use online accounting software for small businesses. Plans start at just $24 per month.

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ZarMoney logo
Category Leaders

Cloud-based accounting solution for businesses of all sizes

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ZarMoney is a cloud-based accounting solution designed to assist businesses of all sizes with the management of inventory and finances. Key features include team collaboration, quote generation, invoicing, transaction tracking, remote access, and approval workflows.

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ZipBooks logo

Accounting and online invoicing software

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ZipBooks is a cloud-based accounting software that caters to the bookkeeping and accounting needs of small to medium-sized businesses and bookkeeping firms. The solution offers core accounting, financial reporting, online invoicing, expense tracking, credit card processing, and more.

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Agicap logo

Manage your cashflow with ease

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Agicap is a software solution for running the cash flow side of your business, offering reliable forecasting and real-time analysis.

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Accounting Seed logo
Category Leaders

Accounting and analytics software built on Salesforce

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Accounting Seed is cloud-based software built in Salesforce that gives you all the tools you need to seamlessly connect financial data company-wide. Learn more about our product at: https://www.accountingseed.com/product/.

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Multiview ERP logo
Category Leaders

Enterprise resource planning (ERP) solution

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Multiview is a highly-scalable modular ERP software for scaling organizations which require more automation, control and insight into their operations. A fully-integrated suite of financials ranges from core accounting, budgeting and forecasting to materials management and workflow approvals.

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AccountEdge logo

Desktop accounting software for small businesses

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AccountEdge is a powerful, easy-to-use, small-business
accounting software for the Mac and Windows desktop in the United States and Canada.

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AccountsIQ logo

Cloud-based accounting software for medium-sized businesses

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Smart cloud accounting and consolidation software with business analytics, cashflow forecasting and management and budgeting.

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Neat logo

Easy-to-use bookkeeping automation for small business

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Neat is your all-in-one small business accounting and bookkeeping software that replaces the guesswork of spreadsheets, handwritten records, and manual invoices. Try for free today!

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Stax Bill logo

Subscription management and recurring billing software

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Simplify accounts receivables by automating recurring invoicing, payment collections, reconciliation, and revenue recognition. Fusebill includes seamless integration of invoiced and credit card customers, and online checkout pages without coding or responsibilities of PCI Level 1 compliance.

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