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Billing and Invoicing Software with Payment Reconciliation (2026)

Last updated: April 2026

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51 software options

QuickBooks Online logo

Accounting and business management software

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Use QuickBooks Online to create custom invoices with your own branding. Insert Pay Now links to your invoices and accept payment via credit card or bank payment

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Wave logo

Accounting, invoicing, and payroll management platform

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With Wave's comprehensive, free and unlimited invoicing tools, you can send invoices, keep track of who owes what, send reminders and more.

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NetSuite logo

AI-powered cloud-based business management suite

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Optimize receivables and accelerate cash flow by automating billing and invoicing processes with NetSuite's AI-fueled cloud accounting software. Transactions are posted to the GL automatically, which saves time, helps avoid error-prone manual data entry and ensures AR data is always up to date.

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QuickBooks Online Advanced logo

Accounting & business management for small businesses

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Automate billing and invoicing with customizable templates, batch processing, and real-time payment tracking for efficient operations.

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Patriot Accounting logo

Cloud-based accounting and payroll software

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Patriot Accounting is an online accounting solution that allows businesses to track and manage transactions, import bank transactions, reconcile accounts, send estimates & invoices & more.

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Zoho Books logo

Online accounting software for businesses of all sizes

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Ensure you get paid on time using Zoho Books invoicing features to send customized invoices and estimates, track payments, send automatic reminders, and more.

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Lightyear logo

Intelligent Purchasing & AP Automation Platform

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Lightyear is an intelligent purchasing & accounts payables automation solution that assist finance teams with automating approvals across different workflows using advanced data extraction, rule-based automation, customizable workflows, and built-in collaboration tools.

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BILL Accounts Payable & Receivable logo

BILL, a leader in financial automation software for SMBs

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Keep track of all your bills and invoices online on any device, sync with all major accounting software. Business bill payments made easy with Bill.com

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Sage Accounting logo

Accounting software for small businesses

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Sage Accounting is an accounting system for small business owners. It has features to help users forecast their cashflow, send and track invoices and act on real-time reporting. Users can manage their business from anywhere, at any time, from the cloud and with mobile functionality. Sage Accounting application is available for iOS and Android.

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Tipalti logo

Finance automation and accounts payable solution

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Tipalti is the only solution to automate your invoice processing alongside end-to-end accounts payable, global payments, and procurement. Integrates seamlessly with QuickBooks, NetSuite, Xero, Sage and more.

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Plooto logo

Accounts payable and receivable software

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Plooto automatically syncs bills and invoices from and to QuickBooks and Xero, makes and requests payments, and reconciles all transactions back into the accounting software. Save countless hours on accounting and payment processes with Plooto.

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Reckon One logo

All small and medium-sized businesses.

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Easy to use online accounting software for small businesses. Plans start at just $24 per month.

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Fortis logo

Embedded payments and invoicing for B2B workflows

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Fortis is a payment processing and invoicing solution that helps businesses receive payments, monitor transactions, capture eSignatures, send payment requests, and more on a centralized platform. It enables team members to create one-time and recurring invoices in compliance with PCI-DSS guidelines.

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ZarMoney logo

Cloud-based accounting solution for businesses of all sizes

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ZarMoney is a cloud-based accounting solution designed to assist businesses of all sizes with the management of inventory and finances. Key features include team collaboration, quote generation, invoicing, transaction tracking, remote access, and approval workflows.

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ZipBooks logo

Accounting and online invoicing software

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ZipBooks is a cloud-based accounting software that caters to the bookkeeping and accounting needs of small to medium-sized businesses and bookkeeping firms. The solution offers core accounting, financial reporting, online invoicing, expense tracking, credit card processing, and more.

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Adaptive logo

AI-Native Financial Operations for Construction

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Adaptive is the AI-powered project accounting platform built for construction companies. It automates job costing, billing, WIP tracking, accounts payable, compliance, and payments while syncing in real time with your existing ERP and accounting systems.

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Accounting Seed logo

Accounting and analytics software built on Salesforce

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Accounting Seed is an accounting application built natively on Salesforce. Its customizable, enabling users to manage their accounting their way. As a full accounting solution, Accounting Seed tracks financial data through the entire business lifecycle.

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AccountEdge logo

Desktop accounting software for small businesses

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AccountEdge is a powerful, easy-to-use, small-business
accounting software for the Mac and Windows desktop in the United States and Canada.

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Neat logo

Easy-to-use bookkeeping automation for small business

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Neat is your all-in-one small business accounting and bookkeeping software that replaces the guesswork of spreadsheets, handwritten records, and manual invoices. Try for free today!

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Stax Bill logo

Subscription management and recurring billing software

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Fusebill automates customer billing with customizable invoices, a built-in payment gateway, and support for taxation, subscription management, accurate revenue recognition and more. Easily tackle your complex billing needs – from simple one-time transactions, usage-based pricing and pro-ration.

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Esker logo

Unlocking Positive-Sum Growth with AI-Driven Solutions

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Esker is a global cloud platform built to unlock strategic value for Finance, Procurement and Customer Service professionals, and strengthen collaboration between companies by automating the cash conversion cycle.

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GoCardless logo

The easy way to get paid.

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At GoCardless, we believe bank payments are the best way to pay and get paid. Over 100,000 businesses around the world use GoCardless to collect and send account-to-account payments confidently and securely - without the chasing, stress, or hidden fees.

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Crunch logo

You live life. We do the numbers.

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Crunch is a groundbreaking online accountancy firm for freelancers, contractors and small businesses. By combining accredited, award-winning in-house accountants with real-time cloud software.

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Biller Genie logo

Automated. Integrated. Simplified.

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Biller Genie seamlessly connects to your accounting software and automatically sends invoices, reminders and past due notifications via email & paper mail. Your customers can pay invoices online via credit card, ACH or Apple Pay and payments are automatically closed in your accounting software.

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OneBill logo

Lead to Revenue Redefined

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OneBill is a revenue management software that provides businesses with tools to streamline subscription management and billing processes. It enables to manage administrative operations, including automated order provisioning & activation, CPQ, revenue reporting, commission management, etc.

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