getapp-logo

App comparison

Add up to 4 apps below to see how they compare. You can also use the "Compare" buttons while browsing.

Software categoriesBlog & researchAbout us

GetApp offers objective, independent research and verified user reviews. We may earn a referral fee when you visit a vendor through our links. 

Top Rated Nonprofit Accounting Software with Payroll management

Last updated: October 2026

Verified reviewer profile picture
Get free expert advice+1 (888) 216-6745
Call now for a one-to-one consultation in under 15 mins.
1 filter applied

Features

Integrated with

No filters available

Pricing model

Devices supported

Organization types

User rating

39 software options

Sage Intacct logo

Best-in-class Cloud ERP for Finance

visit website
Sage Intacct is the AICPA-preferred cloud accounting solution for nonprofits. Automate fund accounting, grant tracking, and ASC 958 reporting. Gain real-time insights with a multi-dimensional GL, AI-powered workflows, and integrations for donor CRMs—purpose-built for mission-driven organizations.

Read more about Sage Intacct

Users also considered
MIP Accounting logo

Fund accounting for government organizations and nonprofits

visit website
MIP Fund Accounting is a comprehensive, configurable fund accounting solution designed to meet and handle the complex financial management and fund accounting needs of nonprofit and government organizations.

Read more about MIP Accounting

Users also considered
Blackbaud Financial Edge NXT logo

Cloud fund accounting software for social good organizations

visit website
Financial Edge NXT delivers comprehensive fund accounting tools that allow organizations to streamline financial processes and demonstrate accountability

Read more about Blackbaud Financial Edge NXT

Users also considered
Aplos logo

Aplos: where every dollar finds its purpose

visit website
Aplos provides the robust accounting framework necessary to track restricted vs unrestricted funds and generate comprehensive, auditor-friendly reports. Our features are crafted to aid budgeting, automate complex allocations, and provide real-time insights into your financial health.

Read more about Aplos

Users also considered
ChurchTrac logo

Online church management software

ChurchTrac is a church management software with features for membership management, donation tracking, accounting, reporting and attendance management

Read more about ChurchTrac

Users also considered
QuickBooks Enterprise logo

Enterprise accounting, FSM and inventory management solution

QuickBooks Desktop Enterprise is an accounting software for small businesses which provides users with real-time access to customer, employee, and vendor information. The software includes tools for managing inventory, shipping, sales orders, pricing, tasks, invoicing, reporting, and more.

Read more about QuickBooks Enterprise

Users also considered
MonkeyPod logo

Your all-in-one nonprofit management platform

MonkeyPod is an all-in-one platform to manage nonprofit accounting, donor management, grants management, CRM, email marketing, online fundraising, and more. Add unlimited users, CRM entities, email subscribers, online fundraising pages, pipelines, and more at no additional cost.

Read more about MonkeyPod

Users also considered
ExpensePlus logo

Brilliant Fund Accounting Software for Charities

ExpensePlus is a cloud-based fund accounting software meticulously designed for churches, charities, and community groups. It offers efficient expense management, donation tracking, and comprehensive financial reporting, tailored to simplify and enhance financial processes.

Read more about ExpensePlus

Users also considered
ZipBooks logo

Accounting and online invoicing software

ZipBooks is a cloud-based accounting software that caters to the bookkeeping and accounting needs of small to medium-sized businesses and bookkeeping firms. The solution offers core accounting, financial reporting, online invoicing, expense tracking, credit card processing, and more.

Read more about ZipBooks

Users also considered
IconCMO Fund Accounting logo

Simple, Powerful Accounting Software.

Icon Systems Accounting is software for managing funds. It is specifically tailored for churches, nonprofits, and small businesses, offering a wide range of features.

Read more about IconCMO Fund Accounting

Users also considered
Icon Church Management logo

Church management software

IconCMO is a church management solution for ministries of all sizes. The cloud-based solution provides tools such as member management, visitor tracking, communications, donor management, fund accounting, child check-in, event registration, and more to help churches manage their operations online.

Read more about Icon Church Management

Users also considered
AccountsIQ logo

Cloud-based accounting software for medium-sized businesses

AccountsIQ is cloud-based accounting software that assists businesses in construction, retail, hospitality, and other sectors with cash flow forecasting, budgeting, and financial reporting.

Read more about AccountsIQ

Users also considered
CHIPS logo

Integrated software for the municipal sector.

Never worry about payroll when you use CHIPS fully integrated payroll system with BUCS fund accounting software.

Read more about CHIPS

Users also considered
Clay logo

Cloud-based GTM data enrichment platform for all sizes

Cloud-based GTM enrichment and workflow automation platform combining 200+ data providers for sales, marketing, and revenue operations.

Read more about Clay

Users also considered
Grain Ledger logo

Fund-based accounting software for churches

Grain Ledger is a cloud-based accounting software designed specifically for churches and ministries. The platform features fund-based accounting that tracks donations, manages expenses, and generates GAAP-compliant financial reports. It integrates with church management systems and includes automated invoice processing, real-time budget tracking, and donor contribution monitoring.

Read more about Grain Ledger

Users also considered
Diamant/4 logo

Accounting & controlling automation system

Diamant/4 is a comprehensive accounting and controlling software that manages finances and automates business processes for organizations with complex financial structures. The modular system builds upon a core financial accounting module with optional extensions for invoice management, asset accounting, reporting, and group accounting. Its flexible integration capabilities allow seamless connection with existing IT landscapes through standardized interfaces and APIs.

Read more about Diamant/4

Users also considered
Xledger logo

Empower ambition with Xledger.

Xledger is a true cloud finance management platform, founded in 2000, and trusted by 100,000+ users worldwide. It automates accounting, unifies multi-entity reporting, and delivers real time insights, helping organisations modernise finance and outperform traditional ERPs

Read more about Xledger

Users also considered
NonProfitPlus logo

Software for nonprofit organizations, management of grants

Native Grant Management software; Track Grants from award to expiration. Flexible reimbursement process with revenue recognition. Budget checking to protect from overspending with many Inquiries. Beneficial for nonprofits looking for Nonprofit accounting software starting @ 725.00 per month.

Read more about NonProfitPlus

Users also considered
omniBooks logo

The all-in-one cloud financial and accounting software

Powerful online accounting software for all your business finance management needs. Grow and track your business with omniBooks.

Read more about omniBooks

Users also considered
Scopevisio logo

Simplify your daily business with Scopevisio.

Scopevisio is the cloud-based business software that automates commercial processes, aligns your company more profitably and thus makes it fit for the digital future.

Read more about Scopevisio

Users also considered
TrulySmall Accounting logo

Small business accounting, simplified.

TrulySmall Accounting is the ideal accounting solution for sole proprietors and freelancers. Simple, automated, and zero bloat.

Read more about TrulySmall Accounting

Users also considered
Adfinity logo

Accounting and financial management software

Adfinity is one of the most complete accounting software packages, offering a large variety of advanced financial management features. Adfinity brings added value in reporting, automation, digitalization of workflows and paperless working.

Read more about Adfinity

Users also considered
Infor SunSystems logo

Powerful financial control. Simplified in the cloud.

Infor SunSystems Cloud is a flexible financial management solution that helps complex organizations manage accounting, compliance and reporting with confidence. It delivers powerful general ledger capabilities, real-time insight and cloud-based resilience.

Read more about Infor SunSystems

Users also considered
Sparkrock logo

Finance & Human Resources Software Suite.

Sparkrock 365 is a cloud-based enterprise resource planning (ERP) software that’s designed specifically for the needs of Not-for-Profit organizations. Sparkrock 365 integrates finance, workforce management, payroll and employee scheduling.

Read more about Sparkrock

Users also considered
QuickBooks Online Advanced logo

Accounting & business management for small businesses

QuickBooks Online Advanced is a web-based accounting & business management solution which enables small businesses to track sales, inventory, financial accounts & payroll from a single dashboard

Read more about QuickBooks Online Advanced

Users also considered