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Payment Processing Software with Payment Reconciliation (2026)

Last updated: April 2026

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90 software options

QuickBooks Online logo

Accounting and business management software

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QuickBooks Online is an all-in-one online business software designed to help manage business finances. The platform is built to scale businesses, unlocking insights and providing the functionality of a larger team, all on one integrated platform.

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Wave logo

Accounting, invoicing, and payroll management platform

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Wave is an integrated solution designed for small businesses. With our automatic bank connections, information flows into Wave, without manual entry. Users can collaborate with accountants or bookkeepers in real-time.

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NetSuite logo

AI-powered cloud-based business management suite

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NetSuite is an AI-powered cloud-based business management suite. It helps organizations streamline their operations and gain real-time insights into their performance. The suite caters to a range of industries such as manufacturing, retail, and professional services.

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QuickBooks Online Advanced logo

Accounting & business management for small businesses

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Streamline payment processing with secure invoicing, online payment options, and automated reconciliation tools.

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Paychex Flex logo

A Simple Approach to HR, Payroll, and Benefits.

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Our onboarding software helps manage new hire paperwork, tasks, and documents digitally. We support paperless onboarding workflows that improve consistency and reduce manual administrative work.

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Jackrabbit Dance logo

Online dance studio management software

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Online dance studio software used by over 12,000 studios & schools will transform the way you run your dance studio. Learn more now!

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Zoho Books logo

Online accounting software for businesses of all sizes

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Zoho Books is an online accounting software designed to streamline back office operations, automate workflows, and allow secure collaboration with accountants

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Jackrabbit Gymnastics logo

Online cheer gym management software

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Online gymnastics class software used by over 12,000 studios & schools will transform the way you run your business. Learn more now!

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Spendesk logo

Smart, trackable spending at work. From Approvals to Zen.

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Empower finance teams with visibility across the entire spending process and wow employees with a streamlined experience for spending at work.

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BILL Accounts Payable & Receivable logo

BILL, a leader in financial automation software for SMBs

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Bill.com's efficient AP and AR software and automation helps you save 50% of your time on business payment management with standardized, automated workflow.

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TUIO logo

Cloud-based school and childcare management system

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TUIO simplifies tuition collection with online payments, same-day payouts, and real-time financial visibility. Streamline your billing process with TUIO today.

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Jackrabbit Swim logo

Online swim school management software

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Jackrabbit Swim is a swim school management solution with online registration, billing, POS, time clock, email/text & more

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Glue Up logo

Community and event management solution

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Glue Up is an all-in-one engagement platform combining event management, membership management, community management, email marketing, CRM, finance tools, project management and mobile apps. Users can manage contacts and members from a single platform. Organizations can also connect social media accounts and reach out to a larger audience using channels, such as Facebook, LinkedIn, Twitter or other social media.

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Tipalti logo

Finance automation and accounts payable solution

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Automate payments to domestic and international suppliers, freelancers, contractors, or affiliates.

Pay in 120 currencies, to 190 countries, via 12 payment methods. Real-time ERP integrations with NetSuite, Quickbooks, Xero and more enable real-time payment reconciliation.

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Plooto logo

Accounts payable and receivable software

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With Plooto's end to end AP and AR workflow automation, simplify the way payments are sent and collected online for both payables and receivables.

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Fortis logo

Embedded payments and invoicing for B2B workflows

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Fortis is a payment processing and invoicing solution that helps businesses receive payments, monitor transactions, capture eSignatures, send payment requests, and more on a centralized platform. It enables team members to create one-time and recurring invoices in compliance with PCI-DSS guidelines.

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ZarMoney logo

Cloud-based accounting solution for businesses of all sizes

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ZarMoney is a cloud-based accounting solution designed to assist businesses of all sizes with the management of inventory and finances. Key features include team collaboration, quote generation, invoicing, transaction tracking, remote access, and approval workflows.

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Agicap logo

Manage your cashflow with ease

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Agicap is a software solution for running the cash flow side of your business, offering reliable forecasting and real-time analysis.

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Pushpay logo

Giving and engagement management for churches

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Pushpay’s nonprofit giving platform boosts donor retention by connecting with your donors in a more meaningful way.

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PDCflow logo

Effortless esignatures, secure payments

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PDCflow is secure esignature, document, and payment software so organizations can combine critical business transactions into one simple digital workflow to save time, reduce costs, and boost operational efficiency.

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Jackrabbit Music logo

Online music school management software

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Jackrabbit Music is a cloud-based music school management tool with scheduling, accounts receivable, POS, student portal, enrollment, reporting, and more

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Payment Depot logo

The nation's only wholesale credit card processing rates

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The nation's only Credit Card Processor offering wholesale rates. Web API, Virtual Terminal, Recurring Billing, Tokenization/Encryption, Mobile card processing

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PaidYET logo

Cloud-based PoS, invoicing & payments processing solution

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PaidYET is a cloud-based, PCI compliant billing solution designed to help small to large enterprises manage operations, point-of-sale (PoS) transactions, billing and invoicing. The platform enables users to accept payments via email and text through customized payment links.

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PEX logo

Expense management for controlling employee spending

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PEX is an expense management solution for business that integrates your accounting software with prepaid debit cards to control and analyze employee spending

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Stax Bill logo

Subscription management and recurring billing software

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Fusebill automates manual billing and payments processes to manage recurring subscription payments with support for dunning management, multiple payment types, offline payments & automated invoicing. Integrate with any payment gateway to get paid faster.

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